Browse Element(s) Details


OsAffx.5024.1.S1_at

Description tigr:9634.m03406
TID=OsAffx.5024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY056111 AT3g24520MOB24_5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g359605/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative
LOC_Os06g35950OsAffx.31661.2.S1_at8/116+20981677..20982251hypothetical protein
LOC_Os06g35960Os.10570.1.S1_at11/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35960OsAffx.5024.1.S1_at5/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35970Os.11445.1.S1_at11/116+21005769..21007163meiosis 5, putative, expressed
LOC_Os06g35980OsAffx.15766.1.S1_at11/116+21014462..21014761hypothetical protein
LOC_Os06g35990OsAffx.15767.1.S1_at11/116+21020840..21022689hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5024.1.S1_at--192--9711Chr06:20997502..20997526 (25 bp)
TCAACACCTATGTCAGTCTCGTCAC
LOC_Os06g35960
OsAffx.5024.1.S1_at--291--3451Chr06:20997474..20997498 (25 bp)
CAGTTCTATTTCATCGTCTCATCAT
LOC_Os06g35960
OsAffx.5024.1.S1_at--367--9031Chr06:20997435..20997459 (25 bp)
TGCACTTCACATCATGCTGCCATGG
LOC_Os06g35960
OsAffx.5024.1.S1_at--1092--4411Chr06:20997417..20997441 (25 bp)
GCCATGGATTCTCAGTGGTACCCAA
LOC_Os06g35960
OsAffx.5024.1.S1_at--666--9631Chr06:20997410..20997430 (21 bp)
TCAGTGGTACCCAACTCAAAGGTTT
LOC_Os06g35960
OsAffx.5024.1.S1_at--480--1811NONE
ACTCAAAGGTTTCCGCAAGGTGGAT
NONE
OsAffx.5024.1.S1_at--219--1011NONE
AGGATCAACGCACCGTGAGCTGCAG
NONE
OsAffx.5024.1.S1_at--47--7691NONE
GGGTTCAATATTAACACGCCAAATT
NONE
OsAffx.5024.1.S1_at--51--2171NONE
ACACGCCAAATTCCGATACGAAGCA
NONE
OsAffx.5024.1.S1_at--784--8211Chr06:20994774..20994798 (25 bp)
GGAATACCAGTGCAAAGTCGGCATA
NONE
OsAffx.5024.1.S1_at--579--2851Chr06:20994760..20994784 (25 bp)
AAGTCGGCATACAACACAATTCAAT
NONE
Target Sequence 
TCAACACCTATGTCAGTCTCGTCACTCCCAGTTCTATTTCATCGTCTCATCATACTCCCCCCCTCTCTGCACTTCACATC
ATGCTGCCATGGATTCTCAGTGGTACCCAACTCAAAGGTTTCCGCAAGGTGGATCCGGATCGGTGGGAGTTCGCCCACGC
GTCGTTCCTGCGTGGCCAGACCCACCTCCTGCGCAACATCGTCCGCCGCGGCAGCGCGGCCGCCGGCGGGGGAGGCGGCG
GCGGCGGCGGCAAGCGCAGGGACGCGTCGGCGGACGGCGGCGGCGGCGGCGGCGATGAGGACATGACGATGGTGGCGACG
GAGGTGGTCCGGCTGAAGCAGGATCAACGCACCGTGAGCTGCAGGGGGTTCAATATTAACACGCCAAATTCCGATACGAA
GCAACAACATAATCCAATCAGAAGGGTTGATGACATCATTAGATGGCGATGGACGAACAATGGAATACCAGTGCAAAGTC
GGCATACAACACAATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis