Browse Element(s) Details


OsAffx.15767.1.S1_at

Description tigr:9634.m03409
TID=OsAffx.15767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3599011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35960Os.10570.1.S1_at11/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35960OsAffx.5024.1.S1_at5/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35970Os.11445.1.S1_at11/116+21005769..21007163meiosis 5, putative, expressed
LOC_Os06g35980OsAffx.15766.1.S1_at11/116+21014462..21014761hypothetical protein
LOC_Os06g35990OsAffx.15767.1.S1_at11/116+21020840..21022689hypothetical protein
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15767.1.S1_at--1079--8191Chr06:21022319..21022340 (22 bp)
GGAAGGAGGACAAGGCCCTGCTGAT
LOC_Os06g35990
OsAffx.15767.1.S1_at--88--8871Chr06:21022298..21022322 (25 bp)
TGATGAGCTTGACGGGCCAGCCACT
LOC_Os06g35990
OsAffx.15767.1.S1_at--1058--10391Chr06:21022260..21022284 (25 bp)
TTATCTCGGGCTCCGCCGAAAGGAG
LOC_Os06g35990
OsAffx.15767.1.S1_at--1072--8311Chr06:21022252..21022276 (25 bp)
GGCTCCGCCGAAAGGAGGCTCGCAA
LOC_Os06g35990
OsAffx.15767.1.S1_at--365--2311Chr06:21022242..21022266 (25 bp)
AAAGGAGGCTCGCAACCACCGACGA
LOC_Os06g35990
OsAffx.15767.1.S1_at--582--10691Chr06:21021707..21021731 (25 bp)
TTGCCATGGTCACTTCACTGTTCCT
LOC_Os06g35990
OsAffx.15767.1.S1_at--1026--811Chr06:21021702..21021726 (25 bp)
ATGGTCACTTCACTGTTCCTTGCAT
LOC_Os06g35990
OsAffx.15767.1.S1_at--718--2051Chr06:21021696..21021720 (25 bp)
ACTTCACTGTTCCTTGCATTTCCTT
LOC_Os06g35990
OsAffx.15767.1.S1_at--536--10731Chr06:21021683..21021707 (25 bp)
TTGCATTTCCTTTGTTCTCTTCCGA
LOC_Os06g35990
OsAffx.15767.1.S1_at--776--10291Chr06:21021678..21021702 (25 bp)
TTTCCTTTGTTCTCTTCCGATCCAT
LOC_Os06g35990
OsAffx.15767.1.S1_at--186--9571Chr06:21021666..21021690 (25 bp)
TCTTCCGATCCATCCTGTGGATAGA
LOC_Os06g35990
Target Sequence 
GGAAGGAGGACAAGGCCCTGCTGATGAGCTTGACGGGCCAGCCACTGCCGGCGCACGCCTTATCTCGGGCTCCGCCGAAA
GGAGGCTCGCAACCACCGACGAGCCACTCGTCCTCGGCCTCCGCAGCTTGGTCACCACCATGCATGTGGCACCCCCTTGC
CATGGTCACTTCACTGTTCCTTGCATTTCCTTTGTTCTCTTCCGATCCATCCTGTGGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis