Browse Element(s) Details


OsAffx.15769.1.S1_at

Description tigr:9634.m03411
TID=OsAffx.15769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3600011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35980OsAffx.15766.1.S1_at11/116+21014462..21014761hypothetical protein
LOC_Os06g35990OsAffx.15767.1.S1_at11/116+21020840..21022689hypothetical protein
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36010Os.4968.1.S1_at11/116+21047728..21048726Plastocyanin-like domain containing protein, expressed
LOC_Os06g36020NANA6+21054964..21058845retrotransposon protein, putative, unclassified
LOC_Os06g36030OsAffx.5025.1.S1_at4/116+21060009..21061010SWIM zinc finger family protein, expressed
LOC_Os06g36040NANA6+21062305..21062946expressed protein
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15769.1.S1_at--474--10491Chr06:21040196..21040220 (25 bp)
TTAATGCCGCCCCAGGCATCGCCAT
LOC_Os06g36000
OsAffx.15769.1.S1_at--920--4131Chr06:21040242..21040266 (25 bp)
CGCTCGTTGCCCAGGTCGACCAGGA
LOC_Os06g36000
OsAffx.15769.1.S1_at--578--9391Chr06:21040245..21040269 (25 bp)
TCGTTGCCCAGGTCGACCAGGACGA
LOC_Os06g36000
OsAffx.15769.1.S1_at--1057--6671Chr06:21040247..21040271 (25 bp)
GTTGCCCAGGTCGACCAGGACGACG
LOC_Os06g36000
OsAffx.15769.1.S1_at--710--1511Chr06:21040349..21040373 (25 bp)
AGCAGCGGCGCTACGACGTTCCACT
LOC_Os06g36000
OsAffx.15769.1.S1_at--1036--4691Chr06:21040353..21040377 (25 bp)
GCGGCGCTACGACGTTCCACTACGA
LOC_Os06g36000
OsAffx.15769.1.S1_at--584--5851Chr06:21040388..21040412 (25 bp)
GACCAGCCGTGGTACGACCAGCCGG
LOC_Os06g36000
OsAffx.15769.1.S1_at--611--8351Chr06:21040411..21040435 (25 bp)
GGCGGCGTGTCTGCAGGACGGCGGC
LOC_Os06g36000
OsAffx.15769.1.S1_at--518--3771Chr06:21040463..21040487 (25 bp)
CTCGGGTTCGAGCTGGACCATGTCT
LOC_Os06g36000
OsAffx.15769.1.S1_at--803--9431Chr06:21040464..21040488 (25 bp)
TCGGGTTCGAGCTGGACCATGTCTG
LOC_Os06g36000
OsAffx.15769.1.S1_at--1090--1611Chr06:21040473..21040497 (25 bp)
AGCTGGACCATGTCTGGGCGGACGG
LOC_Os06g36000
Target Sequence 
TTAATGCCGCCCCAGGCATCGCCATCAGAGGCGGCTCGCGCGCACGCGCTCGTTGCCCAGGTCGACCAGGACGACGACGA
CGAGGAGCTGGAGGAGATCGTCGAGCTGCCGCCCATCGACGAGCTCGACGCCGCGGCAGAGCTCGTGTTCGCCAGCAGCG
GCGCTACGACGTTCCACTACGACCCCGCCGCCGACCAGCCGTGGTACGACCAGCCGGCGGCGTGTCTGCAGGACGGCGGC
GGCGGCGGCATTGCCGTGCACGACGCGCTCGGGTTCGAGCTGGACCATGTCTGGGCGGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis