Browse Element(s) Details


OsAffx.24232.1.S1_at

Description tigr:9634.m03410
TID=OsAffx.24232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161544 apetala2 domain TINY like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g360002/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35980OsAffx.15766.1.S1_at11/116+21014462..21014761hypothetical protein
LOC_Os06g35990OsAffx.15767.1.S1_at11/116+21020840..21022689hypothetical protein
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36010Os.4968.1.S1_at11/116+21047728..21048726Plastocyanin-like domain containing protein, expressed
LOC_Os06g36020NANA6+21054964..21058845retrotransposon protein, putative, unclassified
LOC_Os06g36030OsAffx.5025.1.S1_at4/116+21060009..21061010SWIM zinc finger family protein, expressed
LOC_Os06g36040NANA6+21062305..21062946expressed protein
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24232.1.S1_at--1114--571Chr06:21039743..21039767 (25 bp)
ATGCCAATGCCGGAGTACGAGCTGG
LOC_Os06g36000
OsAffx.24232.1.S1_at--969--8031Chr06:21039754..21039778 (25 bp)
GGAGTACGAGCTGGCGGCGTGCAGT
LOC_Os06g36000
OsAffx.24232.1.S1_at--465--8051NONE
GGAGATCAGGGAGCCTCTCAAGAAG
NONE
OsAffx.24232.1.S1_at--530--8091NONE
GGAGCCTCTCAAGAAGTCGCGCATT
NONE
OsAffx.24232.1.S1_at--1049--1671NONE
AGCCTCTCAAGAAGTCGCGCATTTG
NONE
OsAffx.24232.1.S1_at--418--3771NONE
CTCTCAAGAAGTCGCGCATTTGGCT
NONE
OsAffx.24232.1.S1_at--33--5091NONE
GCACGTTCCCTACGCCCGAGATGGT
NONE
OsAffx.24232.1.S1_at--972--9231NONE
TCCCTACGCCCGAGATGGTAGCGCA
NONE
OsAffx.24232.1.S1_at--575--6251NONE
GATGGTAGCGCACGCGCATGAACTC
NONE
OsAffx.24232.1.S1_at--350--6971NONE
GTAGCGCACGCGCATGAACTCTTCG
NONE
OsAffx.24232.1.S1_at--15--1651NONE
AGCGCACGCGCATGAACTCTTCGCT
NONE
Target Sequence 
ATGCCAATGCCGGAGTACGAGCTGGCGGCGTGCAGTCCGGCGTCGCCGTCGTCGTCGGCCTCGTCGACGTCGACGCCACC
GTCGCCTGGGGGAGAGGCGGCGGCGAGGTGCGGCGAGAAGCGCGGGAGGGGCGGCGGTGGGGGTAGGCACCCGACGTACC
GCGGCGTGCGGATGCGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCTCTCAAGAAGTCGCGCATTTGGCTCGGC
ACGTTCCCTACGCCCGAGATGGTAGCGCACGCGCATGAACTCTTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis