Browse Element(s) Details


OsAffx.15763.1.S1_at

Description tigr:9634.m03402
TID=OsAffx.15763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3592010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15763.1.S1_at--1056--10671Chr06:20952489..20952513 (25 bp)
TTCCATGTCAGCTCTCGGGCATCAA
LOC_Os06g35920
OsAffx.15763.1.S1_at--441--9511Chr06:20952501..20952525 (25 bp)
TCTCGGGCATCAACTACGACCGTGT
LOC_Os06g35920
OsAffx.15763.1.S1_at--1031--2451Chr06:20952530..20952554 (25 bp)
AACAACCTGCCTCGGCGAATGGCCA
LOC_Os06g35920
OsAffx.15763.1.S1_at--1054--3871Chr06:20952566..20952590 (25 bp)
CTGTCGTCGCTCAAGGTCGGTCGAG
LOC_Os06g35920
OsAffx.15763.1.S1_at--731--1031Chr06:20952579..20952603 (25 bp)
AGGTCGGTCGAGTCTGGCTCTACGA
LOC_Os06g35920
OsAffx.15763.1.S1_at--30--5791Chr06:20952650..20952674 (25 bp)
GACGAATGCCTTGCCGCAGTGTCAA
LOC_Os06g35920
OsAffx.15763.1.S1_at--544--1111Chr06:20952667..20952691 (25 bp)
AGTGTCAACTCCCTGCGGCGCTGCA
LOC_Os06g35920
OsAffx.15763.1.S1_at--1031--9031Chr06:20952688..20952712 (25 bp)
TGCATCGTGGGTTCGGTCCGTCATC
LOC_Os06g35920
OsAffx.15763.1.S1_at--939--4571Chr06:20952728..20952752 (25 bp)
GCGCTAGCAACTCGTCGCTGTCGTG
LOC_Os06g35920
OsAffx.15763.1.S1_at--43--4631Chr06:20952766..20952790 (25 bp)
GCGATGTAGTGCCTCCACGAAGCAC
LOC_Os06g35920
OsAffx.15763.1.S1_at--190--2191NONE
ACACAACCTCGCCTGGAAAGAAATT
NONE
Target Sequence 
TTCCATGTCAGCTCTCGGGCATCAACTACGACCGTGTCGGCAACAACCTGCCTCGGCGAATGGCCATGTCGTCGATGCTG
TCGTCGCTCAAGGTCGGTCGAGTCTGGCTCTACGACGCCGACCCGGCCAACACTGGGGTGGAGCTCGTCGTCGGTGTCCC
CGACGAATGCCTTGCCGCAGTGTCAACTCCCTGCGGCGCTGCATCGTGGGTTCGGTCCGTCATCCAGCCGGGGCTCCCGG
CGCTAGCAACTCGTCGCTGTCGTGGTCGCTGCTCCCGGCGATGTAGTGCCTCCACGAAGCACTCGCGCAGCTCGGACTCG
ACAAGCAGGTGGTCATCACCACCACACACAACCTCGCCTGGAAAGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis