Browse Element(s) Details


Os.52241.1.S1_at

Description gb:AK065833.1
DB_XREF= gi:32975851
TID=Os.52241.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040K01, full insert sequence.
FL= gb:AK065833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35780Os.46785.2.S1_x_at2/116+20878191..20883205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790NANA6+20884780..20885037hypothetical protein
LOC_Os06g35800Os.38395.3.S1_x_at11/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.2.S1_x_at9/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.5.S1_at3/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.1.S1_at1/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35814Os.2675.1.S1_at11/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814OsAffx.27955.1.S1_at8/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814Os.57489.1.S1_x_at5/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35830Os.52241.1.S1_at11/116+20905014..20906214expressed protein
LOC_Os06g35840NANA6+20909428..20913730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850Os.52163.1.S1_at11/116+20914617..20917497Protein kinase domain containing protein, expressed
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52241.1.S1_at--648--8191Chr06:20905451..20905733 (25 bp)
GGAAGAAGATGCTCTGCTACTGCTT
LOC_Os06g35830
Os.52241.1.S1_at--44--9091Chr06:20905723..20905747 (25 bp)
TGCTACTGCTTCTGGTGACATGAAA
LOC_Os06g35830
Os.52241.1.S1_at--398--9511Chr06:20905779..20905803 (25 bp)
TCTCGAGTGCAGAATTGCGTGCTTA
LOC_Os06g35830
Os.52241.1.S1_at--237--6091Chr06:20905810..20905834 (25 bp)
GAGTAGGTATCTATGCGATGCAACA
LOC_Os06g35830
Os.52241.1.S1_at--53--2231Chr06:20905865..20905889 (25 bp)
ACAAGAGGGTGTCCAATCCACGCAT
LOC_Os06g35830
Os.52241.1.S1_at--570--571Chr06:20905880..20905904 (25 bp)
ATCCACGCATGTACTGCCAAAACAT
LOC_Os06g35830
Os.52241.1.S1_at--144--6991Chr06:20905925..20905949 (25 bp)
GTACCTGATGCTCTGTAATTACCAT
LOC_Os06g35830
Os.52241.1.S1_at--761--6331Chr06:20905994..20906018 (25 bp)
GATGCATCGTGCGTGTACTGATCTA
LOC_Os06g35830
Os.52241.1.S1_at--597--8751Chr06:20906033..20906057 (25 bp)
TGTAGAATTACTTCGCATCATGCGT
LOC_Os06g35830
Os.52241.1.S1_at--910--6971Chr06:20906056..20906080 (25 bp)
GTACCACGTGTTAATTTTCAGCCTT
LOC_Os06g35830
Os.52241.1.S1_at--609--1471Chr06:20906170..20906194 (25 bp)
AGAATTGTAATCTCTCCGTTTCACA
LOC_Os06g35830
Target Sequence 
GGAAGAAGATGCTCTGCTACTGCTTCTGGTGACATGAAATTGGTATTTTGGCATCATTGGCTTGGCTTCTTCTCGAGTGC
AGAATTGCGTGCTTAATGATGGAGTAGGTATCTATGCGATGCAACAGAAGAAAAAAAAGGGGGTCAATACTCCAACACAA
GAGGGTGTCCAATCCACGCATGTACTGCCAAAACATTGTGAAATACTTTTTTTTTGGTACCTGATGCTCTGTAATTACCA
TTGATTTCTTTAACAGCTTTACTGTTTTTCCATGTGAAATTTATTGATGCATCGTGCGTGTACTGATCTAAAGAAGACAA
ATGTTGTAGAATTACTTCGCATCATGCGTACCACGTGTTAATTTTCAGCCTTTTAGTTAGAGGAAATTAAGAACATGAAT
GGACTGTATATATCTGCATGATATCTAGATGGACAAAGAAGCGGAAAATAAGCTTCTTTGTAGAATTGTAATCTCTCCGT
TTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis