Browse Element(s) Details


Os.11684.1.S1_at

Description gb:AK065766.1
DB_XREF= gi:32975784
TID=Os.11684.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041K19, full insert sequence.
FL= gb:AK065766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4897011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11684.1.S1_at--65--2851Chr05:28008281..28008305 (25 bp)
AAGTCAAGTTCTTATGTCCCGGACG
LOC_Os05g48970
Os.11684.1.S1_at--1058--10431Chr05:28008292..28008316 (25 bp)
TTATGTCCCGGACGCTGATTGCATG
LOC_Os05g48970
Os.11684.1.S1_at--332--8831Chr05:28008307..28008331 (25 bp)
TGATTGCATGCCTGATCAGTCTTCT
LOC_Os05g48970
Os.11684.1.S1_at--47--5431Chr05:28008647..28008671 (25 bp)
GAACTCGTTGGAACCCTTGGTTGTG
LOC_Os05g48970
Os.11684.1.S1_at--600--7351Chr05:28008713..28008737 (25 bp)
GTGAAGAACCTGTGCCCCATCTGCA
LOC_Os05g48970
Os.11684.1.S1_at--754--9771Chr05:28008851..28008875 (25 bp)
TAATGGTTGTGCCTGTATTTCCGTT
LOC_Os05g48970
Os.11684.1.S1_at--950--171Chr05:28008867..28008891 (25 bp)
ATTTCCGTTGTTGTGATACCTAAAG
LOC_Os05g48970
Os.11684.1.S1_at--437--5631Chr05:28008930..28008954 (25 bp)
GACACTAAATGTTCCATGATGCGCG
LOC_Os05g48970
Os.11684.1.S1_at--632--4571Chr05:28008950..28008974 (25 bp)
GCGCGAACAGCTATCATCATGGCAT
LOC_Os05g48970
Os.11684.1.S1_at--217--6391Chr05:28008983..28009007 (25 bp)
GATCGCTCAATTTTTCCCTTTTTAT
LOC_Os05g48970
Os.11684.1.S1_at--456--5471Chr05:28009053..28009077 (25 bp)
GAACTTGTAGTTCTTCTGTACATTG
LOC_Os05g48970
Target Sequence 
AAGTCAAGTTCTTATGTCCCGGACGCTGATTGCATGCCTGATCAGTCTTCTGTGGAGAAGGATGCTTGCATAATCTGCCA
GGAGGAATATGAGGCTAAAGAACTCGTTGGAACCCTTGGTTGTGGTCACAAGTACCATGCGATGTGCATAAAAGGGTGGC
TGATGGTGAAGAACCTGTGCCCCATCTGCAAAACAACAGCTTTGCCAGCTGATAGAAGAAACGGATGATGGATGCCAATA
ACATTTATTGGTCATTTGCAGCAACAAACATTCAGCTCAGTTTTGTACATAAGACATGCTGGATAATGGTTGTGCCTGTA
TTTCCGTTGTTGTGATACCTAAAGCTGTACAGTGAGAATCGCTCATCTTGTAGATTGTTTTAGACACTAAATGTTCCATG
ATGCGCGAACAGCTATCATCATGGCATAGCTATTAGATCGCTCAATTTTTCCCTTTTTATTGTACATGATATTTATCTTT
ATTCTTTTCCCAAAAAGAAAAAAGAGAACTTGTAGTTCTTCTGTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis