Browse Element(s) Details


OsAffx.27375.1.S1_at

Description tigr:9633.m04589
TID=OsAffx.27375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4899011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27375.1.S1_at--1062--9051Chr05:28018252..28018276 (25 bp)
TGCATGATGCTGTCTCGGCTGCAGA
LOC_Os05g48990
OsAffx.27375.1.S1_at--1051--5031Chr05:28018272..28018296 (25 bp)
GCAGATGCTAGTACGGCGGCCATGA
LOC_Os05g48990
OsAffx.27375.1.S1_at--695--5951Chr05:28018331..28018355 (25 bp)
GAGCAACGTCGTCGCTACAAGCTCT
LOC_Os05g48990
OsAffx.27375.1.S1_at--1016--2691Chr05:28018349..28018373 (25 bp)
AAGCTCTGCACTCGCTGATCAGTTG
LOC_Os05g48990
OsAffx.27375.1.S1_at--1111--10731Chr05:28020490..28020633 (25 bp)
TTGCAAGGGCGTTTGTTCCGAGATT
LOC_Os05g48990
OsAffx.27375.1.S1_at--464--6611Chr05:28020630..28020654 (25 bp)
GATTGGACGTGTGCATGGCATCCTT
LOC_Os05g48990
OsAffx.27375.1.S1_at--851--2331Chr05:28020663..28020687 (25 bp)
AAAGATGCTTTCAACATCGCCTCTC
LOC_Os05g48990
OsAffx.27375.1.S1_at--113--9471Chr05:28020690..28020714 (25 bp)
TCTGGCTTGGATTTCCGCATGCATA
LOC_Os05g48990
OsAffx.27375.1.S1_at--452--6511Chr05:28020715..28020739 (25 bp)
GATATGCTAGCTTTTTGGCAGTCAT
LOC_Os05g48990
OsAffx.27375.1.S1_at--632--5771Chr05:28021287..28021311 (25 bp)
GACGAGACGATGTGCACCAAGACCA
LOC_Os05g48990
OsAffx.27375.1.S1_at--388--8391Chr05:28021328..28021352 (25 bp)
GGCGACGATGCACCTCAACGTGAAG
LOC_Os05g48990
Target Sequence 
TGCATGATGCTGTCTCGGCTGCAGATGCTAGTACGGCGGCCATGATCCTTCCATTCACCACCACTGCTGCTGCGACGCCG
AGCAACGTCGTCGCTACAAGCTCTGCACTCGCTGATCAGTTGCAAGGGCGTTTGTTCCGAGATTGGACGTGTGCATGGCA
TCCTTCTTCTCAAAAAGATGCTTTCAACATCGCCTCTCTCTCTGGCTTGGATTTCCGCATGCATAGATATGCTAGCTTTT
TGGCAGTCATAAACTTGCCAGAGGGAGGGGCGGCGCCGCCGCCGCCCTCGGCGACGGTGGTGGCGGTGAGCCGCGACGAC
GAGACGATGTGCACCAAGACCACGAGCTACAGCTTCCCGGCGACGATGCACCTCAACGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis