Browse Element(s) Details


OsAffx.27376.1.S1_at

Description tigr:9633.m04590
TID=OsAffx.27376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4900010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0046202biological_processcyanide biosynthesis
GO:0016832molecular_functionaldehyde-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27376.1.S1_at--563--8051Chr05:28024324..28024553 (25 bp)
GGAAGTCGCCGATGGAAAATTTGGT
LOC_Os05g49000
OsAffx.27376.1.S1_at--39--31Chr05:28024605..28024629 (25 bp)
ATTGGCTCCTCAGCTCTGGAGCAGC
LOC_Os05g49000
OsAffx.27376.1.S1_at--214--1571Chr05:28024627..28024646 (20 bp)
AGCTATCCTCTGTGCCGGAGATCAT
LOC_Os05g49000
OsAffx.27376.1.S1_at--599--4291NONE
CCTCTGTGCCGGAGATCATTGTGTG
NONE
OsAffx.27376.1.S1_at--426--6431Chr05:28025161..28025185 (25 bp)
GATCATTGTGTGTCGGAGCACTTCA
LOC_Os05g49000
OsAffx.27376.1.S1_at--53--8071Chr05:28025175..28025199 (25 bp)
GGAGCACTTCAAAACCTCTTGCAAA
LOC_Os05g49000
OsAffx.27376.1.S1_at--1005--811Chr05:28025209..28025233 (25 bp)
ATGGAGGAACTTTATCAACCGCAGA
LOC_Os05g49000
OsAffx.27376.1.S1_at--956--9711Chr05:28025223..28025247 (25 bp)
TCAACCGCAGAAGGAGCAAGTCAAT
LOC_Os05g49000
OsAffx.27376.1.S1_at--402--1491Chr05:28025237..28025261 (25 bp)
AGCAAGTCAATAACTCCACGGCCGT
LOC_Os05g49000
OsAffx.27376.1.S1_at--978--4671Chr05:28025397..28025421 (25 bp)
GCGGATTCGTTAGGACGCTGGCCAT
LOC_Os05g49000
OsAffx.27376.1.S1_at--170--2651Chr05:28025546..28025570 (25 bp)
AACCACGGCGAGAAGCGTCAGAGGC
LOC_Os05g49000
Target Sequence 
GGAAGTCGCCGATGGAAAATTTGGTGGTCTGGTAATCGATCACACCAAGAAGAAGAAGAAAGCCAAAGGCACCGTCATTG
GCTCCTCAGCTCTGGAGCAGCTATCCTCTGTGCCGGAGATCATTGTGTGTCGGAGCACTTCAAAACCTCTTGCAAACAAA
TTCATATGGAGGAACTTTATCAACCGCAGAAGGAGCAAGTCAATAACTCCACGGCCGTGGGCGGCGGCGGCGGTGGGGGG
AGGCACGGCGGGGTGCCCGCTCGCCGCGACGCTGGCCGATCCTGGCGGCGGCCGCGTGCTGGTGCTGGAGCGGGGCGGCG
CGCCCGCGGAGTTCCCGCCGCTCGCCACCGCGGGCGGATTCGTTAGGACGCTGGCCATGGCGGACCCGGCGCCCGAGTTG
GACGCGCCCGCGCAGACCTTCGTCTCCGAGGACGGCGTGCCGAACGTCCGCGCCCGCGTCCTCGGCGGCGCCACCTCCGT
CAACGCGCCCATCCTGTTCCACAACCACGGCGAGAAGCGTCAGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis