Browse Element(s) Details


Os.40415.1.A1_s_at

Description gb:CF334118
DB_XREF= gi:33816568
DB_XREF=JMT--03-E15.b1
CLONE=JMT--03-E15
TID=Os.40415.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40415 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4906011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49100Os.10609.1.S1_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49100Os.28828.1.S2_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40415.1.A1_s_at--299--5391Chr05:28045516..28045540 (25 bp)
GAAGCATTGGGTTTGCCTTCACGGA
LOC_Os05g49060
Os.40415.1.A1_s_at--826--1471Chr05:28045514..28045538 (25 bp)
AGCATTGGGTTTGCCTTCACGGAAC
LOC_Os05g49060
Os.40415.1.A1_s_at--248--3611Chr05:28045512..28045536 (25 bp)
CATTGGGTTTGCCTTCACGGAACGT
LOC_Os05g49060
Os.40415.1.A1_s_at--843--10831Chr05:28045510..28045534 (25 bp)
TTGGGTTTGCCTTCACGGAACGTGT
LOC_Os05g49060
Os.40415.1.A1_s_at--661--3111Chr05:28045414..28045438 (25 bp)
AATATTATCAAAAGATGCAGTAGCT
LOC_Os05g49060
Os.40415.1.A1_s_at--336--611Chr05:28045354..28045378 (25 bp)
ATGCAAAGCAATGCAGAGGTGCCAA
LOC_Os05g49060
Os.40415.1.A1_s_at--392--3971Chr05:28045316..28045340 (25 bp)
CGGTTGTAATGTAGCTTTGGCCAGT
LOC_Os05g49060
Os.40415.1.A1_s_at--863--9751Chr05:28045310..28045334 (25 bp)
TAATGTAGCTTTGGCCAGTGGCGTT
LOC_Os05g49060
Os.40415.1.A1_s_at--1067--1551Chr05:28045304..28045328 (25 bp)
AGCTTTGGCCAGTGGCGTTGTTGAA
LOC_Os05g49060
Os.40415.1.A1_s_at--599--10871Chr05:28045300..28045324 (25 bp)
TTGGCCAGTGGCGTTGTTGAACTGA
LOC_Os05g49060
Os.40415.1.A1_s_at--690--1091Chr05:28045294..28045318 (25 bp)
AGTGGCGTTGTTGAACTGAGATCAA
LOC_Os05g49060
Target Sequence 
GAAGCATTGGGTTTGCCTTCACGGAACGTGTTTAGCAACTTGAGACCAGTTCCCCATTAGGGGCTAGTTCCCTCNTTTTT
TAGACAAACTTTAGCGATCAATAATATTATCAAAAGATGCAGTAGCTTGCCATTTCCCAGTTTACTGCCTTTGGTAACAT
ATATGCAAAGCAATGCAGAGGTGCCAATTGGCGTTTTCGNCGGTTGTAATGTAGCTTTGGCCAGTGGCGTTGTTGAACTG
AGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40415.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis