Browse Element(s) Details


Os.51652.1.S1_at

Description gb:AK063277.1
DB_XREF= gi:32973295
TID=Os.51652.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C06, full insert sequence.
FL= gb:AK063277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4904011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51652.1.S1_at--300--6451Chr05:28040850..28040874 (25 bp)
GATAAGCAACTTCGAGAACGCCTTC
LOC_Os05g49040
Os.51652.1.S1_at--229--5111Chr05:28040902..28040926 (25 bp)
GCACTGTATGGTTTCATTTGGCTTC
LOC_Os05g49040
Os.51652.1.S1_at--724--211Chr05:28040917..28040941 (25 bp)
ATTTGGCTTCAACCACTCATCGGAT
LOC_Os05g49040
Os.51652.1.S1_at--795--971Chr05:28041066..28041090 (25 bp)
AGGAGCATCTGGTACTTGACCCACT
LOC_Os05g49040
Os.51652.1.S1_at--978--8251Chr05:28041141..28041165 (25 bp)
GGCATGCACACCTACCATGAGAGGA
LOC_Os05g49040
Os.51652.1.S1_at--206--2752Chr05:28041280..28041304 (25 bp)
AAGAAGCCGCCGCACTTGGAGACGA
LOC_Os05g49040
Os.51652.1.S1_at--610--1511Chr05:28041322..28041346 (25 bp)
AGCAGTCGGAGGAGCACGTGTACCC
LOC_Os05g49040
Os.51652.1.S1_at--60--7451Chr05:28041339..28041363 (25 bp)
GTGTACCCTGCCAATGATCACAAGG
LOC_Os05g49040
Os.51652.1.S1_at--271--4171Chr05:28041368..28041392 (25 bp)
CGCCGTGGTGCCGTAGTGAAATTAC
LOC_Os05g49040
Os.51652.1.S1_at--76--6191Chr05:28041474..28041498 (25 bp)
GAGGAGCTCACATCTGTACAGTACA
LOC_Os05g49040
Os.51652.1.S1_at--57--9531Chr05:28041505..28041529 (25 bp)
TCTCAGATACATTTGCCTTGCTCGA
LOC_Os05g49040
Target Sequence 
GATAAGCAACTTCGAGAACGCCTTCAACAACACACACCAGAGAATAGGATTGGCACTGTATGGTTTCATTTGGCTTCAAC
CACTCATCGGATTCTTGAGACCAGACAGAGGTGTGAGGTTCAGGAGCATCTGGTACTTGACCCACTGGCTTCTTGGCATC
GCGATCTGCGTGGTGGGCGTCGCCAACGTCTACATCGGCATGCACACCTACCATGAGAGGACCGGGAGGAGCGTGAGGCC
GTGGACGGTGCTCCTCACCGTGGAGGTGTCGGCCATGGCGTTCGTCTACCTCTTCCAGGACAGGTGGAACCACGTCGTGC
GGCAGCAGCAGCAGCAAGAAGCCGCCGCACTTGGAGACGACGACGACGACGACGACGAGCAGTCGGAGGAGCACGTGTAC
CCTGCCAATGATCACAAGGAGGTCGCCGTGGTGCCGTAGTGAAATTACAGTAGAAATTGATACAGAATCAATGGCGGATT
TGCGCCAAATGCTTTGATTTGAGAGAGAGAGAGAGAGAGAGCTTGTGTTGAGGAGCTCACATCTGTACAGTACAAGAAGC
TCTCAGATACATTTGCCTTGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis