Browse Element(s) Details


OsAffx.15163.1.S1_at

Description tigr:9633.m04598
TID=OsAffx.15163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Arabidopsis ETTIN-like protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g490901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49100Os.10609.1.S1_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49100Os.28828.1.S2_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15163.1.S1_at--218--5531Chr05:28053516..28053768 (25 bp)
GAAACGGCTGTAATCCAAATTCCAA
LOC_Os05g49090
OsAffx.15163.1.S1_at--801--5171NONE
GCAAGTTCATGAGCCAAGGCCTGTT
NONE
OsAffx.15163.1.S1_at--1021--5271NONE
GAATGATCTGAATTATGACCTGGAA
NONE
OsAffx.15163.1.S1_at--126--5831NONE
GACCTGGAATTTGCAACATTATCTG
NONE
OsAffx.15163.1.S1_at--769--2451NONE
AACACTAGGGATTGCTTCCCATCCA
NONE
OsAffx.15163.1.S1_at--484--6731NONE
GTTCAGTGATACTCCCAAAGCTGCA
NONE
OsAffx.15163.1.S1_at--643--6571NONE
GATTCTTTGTATTCTGTTCCGGATA
NONE
OsAffx.15163.1.S1_at--1003--1791Chr05:28058825..28058849 (25 bp)
ACCGCCTATGCTGTACTGCAAATGC
NONE
OsAffx.15163.1.S1_at--914--5451Chr05:28059479..28059500 (22 bp)
GAACTGAGTATATCGTGGGCCGCAC
NONE
OsAffx.15163.1.S1_at--1133--5091Chr05:28059497..28059521 (25 bp)
GCACGGCCCATGAGTATTGGATCCA
NONE
OsAffx.15163.1.S1_at--903--8471Chr05:28059514..28059538 (25 bp)
TGGATCCATTCGAGGTTGGGCCCTA
NONE
Target Sequence 
GAAACGGCTGTAATCCAAATTCCAAAATCGAGACAGATGTTCCAGGGGGGAAAGGATGGCCCAGATAACAAAGCTGTTGG
CACAAATAGTTGCAAAATATTTGGCATCTCTTTGACTGAGAAGGTTCCAGCAAGAGAAGAACTATATGATGGCGACGCCA
ACTATTCACTCCAGTCTTTGAAGCAAGTTCATGAGCCAAGGCCTGTTGTTGGCAGGGTGATTGATATTTCAACTATGGAT
ATGAATGATCTGAATTATGACCTGGAATTTGCAACATTATCTGGGAGGGGAAGCAACACTAGGGATTGCTTCCCATCCAC
ATGTTCAGTGATACTCCCAAAGCTGCAGGAGAAGGACAGCAACAGCAGAAAGAAAAGAAGTAAAGGAGATTCTTTGTATT
CTGTTCCGGATAGGAACCGCCTATGCTGTACTGCAAATGCAGTAGGTGTCACTGACATATGGACCAGAACTGAGTATATC
GTGGGCCGCACGGCCCATGAGTATTGGATCCATTCGAGGTTGGGCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis