Browse Element(s) Details


Os.10609.1.S1_at

Description gb:AK070842.1
DB_XREF= gi:32980865
TID=Os.10609.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full insert sequence.
FL= gb:AK070842.1 gb:AK104490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4356010/11L-ascorbate peroxidase 4, putative, expressed
LOC_Os05g491001/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005778cellular_componentperoxisomal membrane
GO:0005829cellular_componentcytosol
GO:0003700molecular_functiontranscription factor activity
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10609.1.S1_at--322--7371Chr08:27422741..27422765 (25 bp)
GTGAGCTACCTATACGAGGCTTCTA
LOC_Os08g43560
Os.10609.1.S1_at--693--9551Chr08:27422691..27422715 (25 bp)
TCTTCATCAGCATGGCCTCATAGTA
LOC_Os08g43560
Os.10609.1.S1_at--953--6291Chr08:27422636..27422660 (25 bp)
GATGATCCAGCCATACGAACACTTC
LOC_Os08g43560
Os.10609.1.S1_at--893--5491Chr08:27422620..27422644 (25 bp)
GAACACTTCCTTCATGTCTACATAT
LOC_Os08g43560
Os.10609.1.S1_at--615--8051Chr08:27422565..27422589 (25 bp)
GGAGATGACATAGCTTCACTATTTA
LOC_Os08g43560
Os.10609.1.S1_at--821--3891Chr08:27422509..27422533 (25 bp)
CTGTGTGCTCTCTAATATCTACAAG
LOC_Os08g43560
Os.10609.1.S1_at--581--5491Chr08:27422485..27422509 (25 bp)
GAACAGTGGTTTGTGTCCTTCGAAT
LOC_Os08g43560
Os.10609.1.S1_at--549--7451Chr08:27422473..27422497 (25 bp)
GTGTCCTTCGAATGTTTGGTCAACT
LOC_Os08g43560
Os.10609.1.S1_at--278--6872Chr05:28072247..28072337 (24 bp)
GTTTGGTCAACTCACTAGCTAGCAG
LOC_Os05g49100
Os.10609.1.S1_at--729--2671NONE
AAGCGTGGCTACTGAAGGTCCTTTT
NONE
Os.10609.1.S1_at--696--10351Chr08:27422318..27422342 (25 bp)
TTTTTACTCGTAAAGTTCCAGTCAT
LOC_Os08g43560
Target Sequence 
GTGAGCTACCTATACGAGGCTTCTAAGAAGAGCAAGTAAGATTGCTATGTTCTTCATCAGCATGGCCTCATAGTAAGTAT
CAGGGTCAAATAACAGAATTCTAGTGATGATCCAGCCATACGAACACTTCCTTCATGTCTACATATACCCTATCAATATT
TCATGGGGAATTATATGGAGATGACATAGCTTCACTATTTAAAAGCACTTTGGACATATATTATTNNNNNNTCTGTGTGC
TCTCTAATATCTACAAGAACAGTGGTTTGTGTCCTTCGAATGTTTGGTCAACTCACTAGCTAGCAGTTCAANAACTGATA
GACGCCNAAGGNGGAATAAGTNATTAACTTGCCTGAANGGATATTTTATACCGGAGANCAACCAGTTATGTTNTACGTAA
GCGTGGCTACTGAAGGTCCTTTTTTTTTACTCGTAAAGTTCCAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis