Browse Element(s) Details


Os.8338.1.S1_at

Description gb:CB631913
DB_XREF= gi:29626902
DB_XREF=OSIIEb09M13.r
CLONE=OSIIEb09M13
TID=Os.8338.1
CNT=61
FEA=FLmRNA
TIER=Stack
STK=19
UG=Os.8338 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for acyl carrier protein (KN33 gene), partial sequence
FL= gb:AK120938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4358011/11Acyl carrier protein III, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8338.1.S1_at--267--3151Chr08:27434675..27434699 (25 bp)
AATTCGATATCTTTCACCAGCGCAA
LOC_Os08g43580
Os.8338.1.S1_at--248--2891Chr08:27434648..27434672 (25 bp)
AAGGGAAATGCATTTCTCCGCCTGC
LOC_Os08g43580
Os.8338.1.S1_at--383--4471Chr08:27434629..27434653 (25 bp)
GCCTGCAGCCAGTGCCTATGAGATT
LOC_Os08g43580
Os.8338.1.S1_at--431--1451Chr08:27434001..27434025 (25 bp)
AGAAGCAACTCGCTGTTCCTGAGGG
LOC_Os08g43580
Os.8338.1.S1_at--820--6691Chr08:27433987..27434011 (25 bp)
GTTCCTGAGGGCACTGAAGTTTCTG
LOC_Os08g43580
Os.8338.1.S1_at--372--1211Chr08:27433970..27433994 (25 bp)
AGTTTCTGGTGCATCCAAGTTCTCA
LOC_Os08g43580
Os.8338.1.S1_at--1083--8031Chr08:27433364..27433388 (25 bp)
GGAGTTCCACATCAGCGTCGAAGAG
LOC_Os08g43580
Os.8338.1.S1_at--569--4111Chr08:27433346..27433370 (25 bp)
CGAAGAGTCAAGTGCGCAGTCAATT
LOC_Os08g43580
Os.8338.1.S1_at--10--9831Chr08:27433218..27433242 (25 bp)
TAAACTAGCTCTACTTCTACCTTGG
LOC_Os08g43580
Os.8338.1.S1_at--116--10591Chr08:27433126..27433150 (25 bp)
TTCTCAAGATTATTGCCCTCTGTGC
LOC_Os08g43580
Os.8338.1.S1_at--1136--51Chr08:27433115..27433139 (25 bp)
ATTGCCCTCTGTGCCGTAATAATAC
LOC_Os08g43580
Target Sequence 
AATTCGATATCTTTCACCAGCGCAAGGAAGGGAAATGCATTTCTCCGCCTGCAGCCAGTGCCTATGAGATTTGCTGTTTG
CTGTGCCGCAAAAAAGGAGACAGTGGAGAAGGTTTGTGACATTGTTAAGAAGCAACTCGCTGTTCCTGAGGGCACTGAAG
TTTCTGGTGCATCCAAGTTCTCAGATCTTGGTGCTGATTCACTGGACACGGTTGAGATTGTGATGGGTCTCGAGGAGGAG
TTCCACATCAGCGTCGAAGAGTCAAGTGCGCAGTCAATTGCAACGGTTGAAGATGCCGCTGCACTCATCGACAAGCTTGT
TGAGCAGAAATCTGCTGAAGCGAAATCATCTTGATATGCACAAATCACAATGTTGAAGCTCGTAAACTAGCTCTACTTCT
ACCTTGGGCCAGCCCTTGTTGTTTTAAGATTGTATCCTTATCGCCTTTTTTTTTTATGACTTGATGGTTTGGTGNNNTTC
TCAAGATTATTGCCCTCTGTGCCGTAATAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis