Browse Element(s) Details


Os.8718.1.S1_at

Description gb:AK058374.1
DB_XREF= gi:32968392
TID=Os.8718.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN3 mRNA for 26S proteasome regulatory particle non-ATPase subunit3, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G09, full insert sequence.
FL= gb:AK061287.1 gb:AK058374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4364011/1126S proteasome non-ATPase regulatory subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43680Os.50768.1.S1_at11/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43680OsAffx.28386.1.S1_at1/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8718.1.S1_at--43--4691Chr08:27456140..27456164 (25 bp)
GCGGAGAGCATTGTAGCCAAGGCAA
LOC_Os08g43640
Os.8718.1.S1_at--1150--3511Chr08:27456083..27456107 (25 bp)
CATGCCAACGGCTGGATGGTGTCGA
LOC_Os08g43640
Os.8718.1.S1_at--268--5551Chr08:27456056..27456080 (25 bp)
GAAACTGGCGATGTCTACTCGACAA
LOC_Os08g43640
Os.8718.1.S1_at--575--3312Chr11:13131550..13131616 (25 bp)
CACAGATTGCATTCAACTCTCGGAT
NONE
Os.8718.1.S1_at--803--1991Chr08:27456010..27456034 (25 bp)
ACTCTCGGATTGCATTTTGCCTCAA
LOC_Os08g43640
Os.8718.1.S1_at--988--10691Chr08:27455994..27456018 (25 bp)
TTGCCTCAACATGCACAATGAAGCT
LOC_Os08g43640
Os.8718.1.S1_at--720--1611Chr08:27455973..27455997 (25 bp)
AGCTGTGAAAGCAATGCGGTTCCCC
LOC_Os08g43640
Os.8718.1.S1_at--803--8791Chr08:27455850..27455874 (25 bp)
TGATTTTTAGACTGGCTGGCCACTT
LOC_Os08g43640
Os.8718.1.S1_at--461--4711Chr08:27455836..27455860 (25 bp)
GCTGGCCACTTCTTTGGCACTTTGG
LOC_Os08g43640
Os.8718.1.S1_at--26--8231Chr08:27455821..27455845 (25 bp)
GGCACTTTGGGCTGCCAAATTGCAA
LOC_Os08g43640
Os.8718.1.S1_at--284--5831Chr08:27455774..27455798 (25 bp)
GACCGTAACACACCTATACATGCCA
LOC_Os08g43640
Target Sequence 
GCGGAGAGCATTGTAGCCAAGGCAATAAGGGATGGCGCAATTGATGCCACCATAGATCATGCCAACGGCTGGATGGTGTC
GAAAGAAACTGGCGATGTCTACTCGACAAATGAACCACAGATTGCATTCAACTCTCGGATTGCATTTTGCCTCAACATGC
ACAATGAAGCTGTGAAAGCAATGCGGTTCCCCCCGAACTCTCACAAGGAAAAGGAAAGTGCGGAGAAGCGCCGTGAGAGG
CTCCAACAGGAGGAGGAGCTGGCAAAACACATGGCTGAGGAAGATGACGATGATTTTTAGACTGGCTGGCCACTTCTTTG
GCACTTTGGGCTGCCAAATTGCAATGTTGAGTTGGTTGATCTGAGAGACCGTAACACACCTATACATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis