Browse Element(s) Details


Os.50768.1.S1_at

Description gb:AK058423.1
DB_XREF= gi:32968441
TID=Os.50768.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D11, full insert sequence.
FL= gb:AK058423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4368011/11Glutathione S-transferase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43680Os.50768.1.S1_at11/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43680OsAffx.28386.1.S1_at1/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed
LOC_Os08g43710OsAffx.29536.5.S1_x_at3/118+27493173..27494129transposon protein, putative, unclassified
LOC_Os08g43720NANA8+27497774..27498361hypothetical protein
LOC_Os08g43730OsAffx.17504.1.S1_at11/118+27502139..27506192expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50768.1.S1_at--1082--8951Chr08:27481522..27481546 (25 bp)
TGACAAGTCCAGCTACTCCAGTATA
LOC_Os08g43680
Os.50768.1.S1_at--975--3211Chr08:27481568..27481592 (25 bp)
CAAGGGTCTCAAGCTGCACTGCAGG
LOC_Os08g43680
Os.50768.1.S1_at--100--2891Chr08:27481618..27481642 (25 bp)
AAGGGACCTCCTTGCAAATGCTGAT
LOC_Os08g43680
Os.50768.1.S1_at--397--2871Chr08:27481689..27481713 (25 bp)
AAGGGCGGATCTCCTCTAATACTGA
LOC_Os08g43680
Os.50768.1.S1_at--1005--2531Chr08:27481756..27481780 (25 bp)
AACTGAACCCACTTCATTTGATGGC
LOC_Os08g43680
Os.50768.1.S1_at--209--3071Chr08:27481790..27481814 (25 bp)
AATCTTCCTGAGTCACAGAGGCGTG
LOC_Os08g43680
Os.50768.1.S1_at--801--3691Chr08:27481879..27481903 (25 bp)
CTATCTACTTCCCTATTTTCACATA
LOC_Os08g43680
Os.50768.1.S1_at--364--351Chr08:27481904..27481928 (25 bp)
ATAAGGTCACCTATACACCAGCGGA
LOC_Os08g43680
Os.50768.1.S1_at--778--3551Chr08:27481934..27481958 (25 bp)
CATACCAGTCCATGTTGTCTACTCT
LOC_Os08g43680
Os.50768.1.S1_at--756--4991Chr08:27481959..27481983 (25 bp)
GCATGTTTATTATTCCTTCCCAGTG
LOC_Os08g43680
Os.50768.1.S1_at--217--10651Chr08:27481975..27481999 (25 bp)
TTCCCAGTGGTGCAGTATTGTTCAT
LOC_Os08g43680
Target Sequence 
TGACAAGTCCAGCTACTCCAGTATATCACAAGAAGACAATGTGAAGCAAGGGTCTCAAGCTGCACTGCAGGGATCTGGAA
ATGAGCAGCCTAAGAAAAGGGACCTCCTTGCAAATGCTGATGAGAAAATCAGAGGAACTACAGGAGAAGCCTTACAAAAG
TCTGATGAAGGGCGGATCTCCTCTAATACTGAGCAAATGAAAAGCAACAGAAATAACAGCAAACCAGATGGCTCAACTGA
ACCCACTTCATTTGATGGCAATGAAGGTAATCTTCCTGAGTCACAGAGGCGTGGCTCATCAAGCAACCCGTAAAATGCTT
CATCAGCTCATTTTCTTTCACCATCTCTGCCGTACTGCTATCTACTTCCCTATTTTCACATAATAAGGTCACCTATACAC
CAGCGGACCAGCCATACCAGTCCATGTTGTCTACTCTGCATGTTTATTATTCCTTCCCAGTGGTGCAGTATTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis