Browse Element(s) Details


Os.52978.1.S1_at

Description gb:AK070238.1
DB_XREF= gi:32980262
TID=Os.52978.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043J23, full insert sequence.
FL= gb:AK070238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4365411/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43680Os.50768.1.S1_at11/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43680OsAffx.28386.1.S1_at1/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52978.1.S1_at--1034--5771Chr08:27460283..27460307 (25 bp)
GACGACCCCATCTAGTTAAGCGACA
LOC_Os08g43654
Os.52978.1.S1_at--926--9791Chr08:27460267..27460291 (25 bp)
TAAGCGACAGCGAGCTTCATCATCC
LOC_Os08g43654
Os.52978.1.S1_at--781--9231Chr08:27460245..27460269 (25 bp)
TCCATCCATGGCGTAAGAATTTGTA
LOC_Os08g43654
Os.52978.1.S1_at--173--5231Chr08:27460229..27460253 (25 bp)
GAATTTGTAATGTACCTGCACAATG
LOC_Os08g43654
Os.52978.1.S1_at--313--7032Chr05:11591399..11591487 (25 bp)
GTACATCCTGTTGTCGGATTTGGTT
NONE
Os.52978.1.S1_at--889--211Chr08:27460178..27460202 (25 bp)
ATTTGGTTTGAGATTCGTGCGCGTA
LOC_Os08g43654
Os.52978.1.S1_at--1030--91Chr08:27460166..27460190 (25 bp)
ATTCGTGCGCGTAGCATGGATTGCA
LOC_Os08g43654
Os.52978.1.S1_at--878--3971Chr08:27460113..27460137 (25 bp)
CGTGGTTTTGTGTATCCGAGAATGT
LOC_Os08g43654
Os.52978.1.S1_at--125--5971Chr08:27460096..27460120 (25 bp)
GAGAATGTCAATCCACGATGCAATT
LOC_Os08g43654
Os.52978.1.S1_at--723--7431Chr08:27460066..27460090 (25 bp)
GTGTATGTGCACCTTGTTGTTTGTT
LOC_Os08g43654
Os.52978.1.S1_at--238--10271Chr08:27460037..27460061 (25 bp)
TTTGATTGGAGATTCGTGCGCGTGT
LOC_Os08g43654
Target Sequence 
GACGACCCCATCTAGTTAAGCGACAGCGAGCTTCATCATCCATCCATGGCGTAAGAATTTGTAATGTACCTGCACAATGC
AAGTACATGTACATCCTGTTGTCGGATTTGGTTTGAGATTCGTGCGCGTAGCATGGATTGCAATAAGAAAATGCAGATGT
GTTGATATGTCGTGGTTTTGTGTATCCGAGAATGTCAATCCACGATGCAATTATGCAGTGTATGTGCACCTTGTTGTTTG
TTTGGATTTGATTGGAGATTCGTGCGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis