Browse Element(s) Details


OsAffx.6126.1.S1_x_at

Description tigr:9636.m04449
TID=OsAffx.6126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumhydrogen exchanger family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4369011/11Sodium/hydrogen exchanger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43680Os.50768.1.S1_at11/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43680OsAffx.28386.1.S1_at1/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed
LOC_Os08g43710OsAffx.29536.5.S1_x_at3/118+27493173..27494129transposon protein, putative, unclassified
LOC_Os08g43720NANA8+27497774..27498361hypothetical protein
LOC_Os08g43730OsAffx.17504.1.S1_at11/118+27502139..27506192expressed protein
LOC_Os08g43740OsAffx.29649.1.S1_at11/118+27507831..27508625hypothetical protein
LOC_Os08g43750OsAffx.6127.1.S1_at11/118+27510060..27511233expressed protein
LOC_Os08g43760OsAffx.29650.1.S1_at11/118+27512365..27513410expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6126.1.S1_x_at--1012--5491Chr08:27488051..27488075 (25 bp)
GAACAGCGGCACCAGCTTCAACGTG
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--724--10511Chr08:27488067..27488091 (25 bp)
TTCAACGTGCCCAGCAGCGTGGCGG
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--46--4471Chr08:27488248..27488272 (25 bp)
GCCTCACGGTGTTCCGCTTCGTGAA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--724--9291Chr08:27488260..27488284 (25 bp)
TCCGCTTCGTGAAGCGCAGCACGTA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--740--2671Chr08:27488271..27488295 (25 bp)
AAGCGCAGCACGTACGACAGCGTCA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--564--9371Chr08:27488308..27488332 (25 bp)
TCGACGAGCTGGACATGGCGTTCCA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--1112--1851Chr08:27488347..27488371 (25 bp)
ACGAGCGCTTCCTGTGGAGGTTCTA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--972--4111Chr08:27488352..27488376 (25 bp)
CGCTTCCTGTGGAGGTTCTACGAGA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--741--871Chr08:27488557..27488581 (25 bp)
ATGGCCGGGATGTTCTCGCTGGTCA
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--1041--8351Chr08:27488667..27488691 (25 bp)
GGCGGAGATCCTCGCGTCCAACGAC
LOC_Os08g43690
OsAffx.6126.1.S1_x_at--633--3251Chr08:27488685..27488709 (25 bp)
CAACGACTCGCTGGAGATGGGCTCG
LOC_Os08g43690
Target Sequence 
GAACAGCGGCACCAGCTTCAACGTGCCCAGCAGCGTGGCGGCGGAGGCGGCGGCCACGAGCGGCGGCGGCAGGACGCTCC
TCCACCCGTGCAGCGACAGGGCGGTGACGCACGTCGTCGCCGCCGTGTTCTTCGGCGGCGCCGACGACCGCGAGGCCGTG
TCGCTCGCCTCCCGCCTCGCCGAGCACCCGTCCATCGGCCTCACGGTGTTCCGCTTCGTGAAGCGCAGCACGTACGACAG
CGTCACCTCCGCCAAGGTCGACGAGCTGGACATGGCGTTCCAGGAGGGGGACGTCGACGAGCGCTTCCTGTGGAGGTTCT
ACGAGAGGTACGCGGCGACGGAGATGGCCATGTACGTGGAGAAGGTCGTGGAGAGGCCCGCCGACGTGGAGGAGACGCTG
GCCGGGATGGCCGGGATGTTCTCGCTGGTCATCGTCGGCCGGGGAGGGAGGCAGCCGCCGGAGCTCTTGGCCGGGCTGGA
ACGGTGGGCGGACGCCGGCGGCGAGATGGGCCCCGCGGCGGAGATCCTCGCGTCCAACGACTCGCTGGAGATGGGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6126.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis