Browse Element(s) Details


OsAffx.29650.1.S1_at

Description tigr:9636.m04456
TID=OsAffx.29650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4376011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed
LOC_Os08g43710OsAffx.29536.5.S1_x_at3/118+27493173..27494129transposon protein, putative, unclassified
LOC_Os08g43720NANA8+27497774..27498361hypothetical protein
LOC_Os08g43730OsAffx.17504.1.S1_at11/118+27502139..27506192expressed protein
LOC_Os08g43740OsAffx.29649.1.S1_at11/118+27507831..27508625hypothetical protein
LOC_Os08g43750OsAffx.6127.1.S1_at11/118+27510060..27511233expressed protein
LOC_Os08g43760OsAffx.29650.1.S1_at11/118+27512365..27513410expressed protein
LOC_Os08g43770OsAffx.17505.1.S1_at11/118+27514095..27514799expressed protein
LOC_Os08g43780NANA8+27516760..27517617expressed protein
LOC_Os08g43790NANA8+27518803..27519534hypothetical protein
LOC_Os08g43800OsAffx.6128.1.S1_at2/118+27520655..27521359hypothetical protein
LOC_Os08g43810OsAffx.6128.1.S1_at1/118+27523096..27523803hypothetical protein
LOC_Os08g43820OsAffx.6128.1.S1_at1/118+27524756..27525463hypothetical protein
LOC_Os08g43830OsAffx.6128.1.S1_at2/118+27526382..27527089hypothetical protein
LOC_Os08g43840OsAffx.29651.1.S1_at10/118+27529906..27531623hypothetical protein
LOC_Os08g43850OsAffx.6128.1.S1_at11/118+27532110..27535017hypothetical protein
LOC_Os08g43860OsAffx.6128.1.S1_at2/118+27535493..27536200hypothetical protein
LOC_Os08g43870OsAffx.6128.1.S1_at1/118+27537096..27537800hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29650.1.S1_at--1078--8051Chr08:27512535..27512559 (25 bp)
GGAGCTGATTTGCACACCTAGTAAC
LOC_Os08g43760
OsAffx.29650.1.S1_at--650--6951Chr08:27512555..27512579 (25 bp)
GTAACCAAGTTAGCCTTTGCCAGAA
LOC_Os08g43760
OsAffx.29650.1.S1_at--1120--5351Chr08:27512602..27512626 (25 bp)
GAAGAGCTTGGACGGTCACTCGTCT
LOC_Os08g43760
OsAffx.29650.1.S1_at--536--1291Chr08:27512715..27512739 (25 bp)
AGATGCGTCTGCTCAAGTCAAGGCA
LOC_Os08g43760
OsAffx.29650.1.S1_at--1162--2831Chr08:27512729..27512753 (25 bp)
AAGTCAAGGCATACATCCGGCTAGC
LOC_Os08g43760
OsAffx.29650.1.S1_at--876--1411Chr08:27512847..27512871 (25 bp)
AGAAATCACCGTCTCATTGCTTGAG
LOC_Os08g43760
OsAffx.29650.1.S1_at--281--71Chr08:27512862..27512886 (25 bp)
ATTGCTTGAGTCTACATCCTGTTTC
LOC_Os08g43760
OsAffx.29650.1.S1_at--613--3731Chr08:27512873..27512897 (25 bp)
CTACATCCTGTTTCCTGTCGAAGAA
LOC_Os08g43760
OsAffx.29650.1.S1_at--635--1391Chr08:27512903..27512927 (25 bp)
AGACGCCTAAGTGGTCTCTTGTCTC
LOC_Os08g43760
OsAffx.29650.1.S1_at--39--10811Chr08:27512921..27512945 (25 bp)
TTGTCTCCGCCACATTCCAGAAGAG
LOC_Os08g43760
OsAffx.29650.1.S1_at--1144--4991Chr08:27512973..27512997 (25 bp)
GCAGGAATTGGAGCTCACTATCAAA
LOC_Os08g43760
Target Sequence 
GGAGCTGATTTGCACACCTAGTAACCAAGTTAGCCTTTGCCAGAAGCTGCAAAGGAAGTTGGTGGAGGAAGAGCTTGGAC
GGTCACTCGTCTTGCTTGACCTCTGCAATGCCATGCAAGAAAGCTTCATGGAGTTGAGGATGAGTGTACAAGAGATGATG
TTGGCCATCAAAAGGGGAGAAGATGCGTCTGCTCAAGTCAAGGCATACATCCGGCTAGCCAAGAAGGCGCGGAAGCAATT
CAAGAAGGTCAGCAAAAAGACTGCTTCTGATAAGATGGACTGTAGGGTGGTAAAGCTACTAGCAGAAGCAAGAGAAATCA
CCGTCTCATTGCTTGAGTCTACATCCTGTTTCCTGTCGAAGAAAATTGAGACGCCTAAGTGGTCTCTTGTCTCCGCCACA
TTCCAGAAGAGCAAAGTCATGTGCGAAGAGGAGCAATTGCAGGAATTGGAGCTCACTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis