Browse Element(s) Details


OsAffx.29651.1.S1_at

Description tigr:9636.m04464
TID=OsAffx.29651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4384010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43730OsAffx.17504.1.S1_at11/118+27502139..27506192expressed protein
LOC_Os08g43740OsAffx.29649.1.S1_at11/118+27507831..27508625hypothetical protein
LOC_Os08g43750OsAffx.6127.1.S1_at11/118+27510060..27511233expressed protein
LOC_Os08g43760OsAffx.29650.1.S1_at11/118+27512365..27513410expressed protein
LOC_Os08g43770OsAffx.17505.1.S1_at11/118+27514095..27514799expressed protein
LOC_Os08g43780NANA8+27516760..27517617expressed protein
LOC_Os08g43790NANA8+27518803..27519534hypothetical protein
LOC_Os08g43800OsAffx.6128.1.S1_at2/118+27520655..27521359hypothetical protein
LOC_Os08g43810OsAffx.6128.1.S1_at1/118+27523096..27523803hypothetical protein
LOC_Os08g43820OsAffx.6128.1.S1_at1/118+27524756..27525463hypothetical protein
LOC_Os08g43830OsAffx.6128.1.S1_at2/118+27526382..27527089hypothetical protein
LOC_Os08g43840OsAffx.29651.1.S1_at10/118+27529906..27531623hypothetical protein
LOC_Os08g43850OsAffx.6128.1.S1_at11/118+27532110..27535017hypothetical protein
LOC_Os08g43860OsAffx.6128.1.S1_at2/118+27535493..27536200hypothetical protein
LOC_Os08g43870OsAffx.6128.1.S1_at1/118+27537096..27537800hypothetical protein
LOC_Os08g43880OsAffx.29652.1.S1_at10/118+27538505..27540487hypothetical protein
LOC_Os08g43890NANA8+27540755..27541480hypothetical protein
LOC_Os08g43900OsAffx.17506.1.S1_at11/118+27542747..27543534expressed protein
LOC_Os08g43910OsAffx.17506.1.S1_at4/118+27544799..27545407hypothetical protein
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29651.1.S1_at--53--1391NONE
AGACCTTCCTGAGGCTGCGAGTGAT
NONE
OsAffx.29651.1.S1_at--1005--3011Chr08:27530662..27530686 (25 bp)
AATGCTCCAAATCTTTCCAGTTTAA
LOC_Os08g43840
OsAffx.29651.1.S1_at--396--2391Chr08:27530620..27530644 (25 bp)
AAACTCTCACTTGGAGACCCATTGC
LOC_Os08g43840
OsAffx.29651.1.S1_at--1066--8891Chr08:27530516..27530540 (25 bp)
TGAGACTCTTGCCATTTACTCCAAT
LOC_Os08g43840
OsAffx.29651.1.S1_at--1092--10471Chr08:27530338..27530362 (25 bp)
TTAAGCACCTCACCATTTCCGTTAG
LOC_Os08g43840
OsAffx.29651.1.S1_at--474--1391Chr08:27530307..27530331 (25 bp)
AGCCTCCTTTAACACGTCGTATGAT
LOC_Os08g43840
OsAffx.29651.1.S1_at--759--4311Chr08:27530249..27530273 (25 bp)
CCTTCCTTGGAGACATTGATCTTGA
LOC_Os08g43840
OsAffx.29651.1.S1_at--620--1251Chr08:27530077..27530101 (25 bp)
AGATTCCTCGCCTTTGAGGCAGATG
LOC_Os08g43840
OsAffx.29651.1.S1_at--610--1791Chr08:27530045..27530069 (25 bp)
ACCGCCATTGCTACCTCAAGAGTGT
LOC_Os08g43840
OsAffx.29651.1.S1_at--67--1311Chr08:27530018..27530042 (25 bp)
AGATGACAGGGTTCAGCTCCGCGAA
LOC_Os08g43840
OsAffx.29651.1.S1_at--960--2591Chr08:27529959..27529983 (25 bp)
AACGCGGTGTCACTCGAGTGCCTTA
LOC_Os08g43840
Target Sequence 
AGACCTTCCTGAGGCTGCGAGTGATAGAGAGCAATGCTCCAAATCTTTCCAGTTTAAGCTTCAGCGGAAATGTAAAACTC
TCACTTGGAGACCCATTGCAAGTGAAGAGATTAAGCATGATCCATCCAAAGGTTGTCTGTTATGCTCGTGCCGAGCTGCC
ATCCGTTATGCCAAATCTTGAGACTCTTGCCATTTACTCCAATGATGAGGTGGTCAATACACCAATGCTGCCTACAAAAT
TCCTCTACCTTAAGCACCTCACCATTTCCGTTAGCTCAGCAGCCTCCTTTAACACGTCGTATGATTATTTTTCTCTTGTT
TCTTTCCTTGACGCGTCTCCTTCCTTGGAGACATTGATCTTGAATGTATCACAAGAGCATATGAAGCATGAATCGGTTCT
TGGAGATTCCTCGCCTTTGAGGCAGATGCCGGAACACCGCCATTGCTACCTCAAGAGTGTGAAGATGACAGGGTTCAGCT
CCGCGAAGAACTTGATTGAGCTAACATGTTATATCCTCAAGAACGCGGTGTCACTCGAGTGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis