Browse Element(s) Details


OsAffx.29652.1.S1_at

Description tigr:9636.m04468
TID=OsAffx.29652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4388010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43770OsAffx.17505.1.S1_at11/118+27514095..27514799expressed protein
LOC_Os08g43780NANA8+27516760..27517617expressed protein
LOC_Os08g43790NANA8+27518803..27519534hypothetical protein
LOC_Os08g43800OsAffx.6128.1.S1_at2/118+27520655..27521359hypothetical protein
LOC_Os08g43810OsAffx.6128.1.S1_at1/118+27523096..27523803hypothetical protein
LOC_Os08g43820OsAffx.6128.1.S1_at1/118+27524756..27525463hypothetical protein
LOC_Os08g43830OsAffx.6128.1.S1_at2/118+27526382..27527089hypothetical protein
LOC_Os08g43840OsAffx.29651.1.S1_at10/118+27529906..27531623hypothetical protein
LOC_Os08g43850OsAffx.6128.1.S1_at11/118+27532110..27535017hypothetical protein
LOC_Os08g43860OsAffx.6128.1.S1_at2/118+27535493..27536200hypothetical protein
LOC_Os08g43870OsAffx.6128.1.S1_at1/118+27537096..27537800hypothetical protein
LOC_Os08g43880OsAffx.29652.1.S1_at10/118+27538505..27540487hypothetical protein
LOC_Os08g43890NANA8+27540755..27541480hypothetical protein
LOC_Os08g43900OsAffx.17506.1.S1_at11/118+27542747..27543534expressed protein
LOC_Os08g43910OsAffx.17506.1.S1_at4/118+27544799..27545407hypothetical protein
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29652.1.S1_at--746--2731Chr08:27540105..27540129 (25 bp)
AAGAATCAGCTTGGCAGTTCATTGC
LOC_Os08g43880
OsAffx.29652.1.S1_at--89--5031Chr08:27540092..27540116 (25 bp)
GCAGTTCATTGCTGGGTCCTCACAA
LOC_Os08g43880
OsAffx.29652.1.S1_at--1033--7691NONE
GGGTCCTCACAATCACAGTGTCAGT
NONE
OsAffx.29652.1.S1_at--238--2891Chr08:27539528..27539552 (25 bp)
AAGGGAGACCCTGCTCTGGATGAGT
LOC_Os08g43880
OsAffx.29652.1.S1_at--82--8991Chr08:27539499..27539523 (25 bp)
TGAAGAGAACCTCAACACCGTTGTT
LOC_Os08g43880
OsAffx.29652.1.S1_at--1096--10551Chr08:27539414..27539438 (25 bp)
TTCTTCTTGGAGACGAGCTGGGACC
LOC_Os08g43880
OsAffx.29652.1.S1_at--695--5471Chr08:27539381..27539405 (25 bp)
GAACTCGACATGGTGGCGATCTGCT
LOC_Os08g43880
OsAffx.29652.1.S1_at--188--8471Chr08:27539368..27539392 (25 bp)
TGGCGATCTGCTTCGGCAAGAGCTT
LOC_Os08g43880
OsAffx.29652.1.S1_at--411--8491Chr08:27539305..27539329 (25 bp)
TGGCTTCAGAAGCTGCAGGCTTGCT
LOC_Os08g43880
OsAffx.29652.1.S1_at--354--8091Chr08:27538781..27538805 (25 bp)
GGAGCGGCCGCATGCTGTATAGTCT
LOC_Os08g43880
OsAffx.29652.1.S1_at--323--1991Chr08:27538539..27538563 (25 bp)
ACTCGTCCGGCATATTTGCTGCAGA
LOC_Os08g43880
Target Sequence 
AAGAATCAGCTTGGCAGTTCATTGCTGGGTCCTCACAATCACAGTGTCAGTGTGTTGAGAAGGGAGACCCTGCTCTGGAT
GAGTCTCCTGAAGAGAACCTCAACACCGTTGTTAAGACCAGCAATGTCCAACTCCAACACCTGCAACTGCTCTCCTCGCA
GGAGGCATCTCTCTTCTTCTTGGAGACGAGCTGGGACCACCTGCTTGAACTCGACATGGTGGCGATCTGCTTCGGCAAGA
GCTTTGCTGCTGCTGTTTCGAGCGCTGCGACGGCGATCTCTCTGGCTTCAGAAGCTGCAGGCTTGCTGCTGCCACCGCCG
GAGATACTGCCTACTCGTCGCCTCCCACAACTCACCACCACCGGAGAAGGCAAGAAAGAGTGGAGGGGTAGAGCCCGCTC
TGGCGAGTCGGCGACGGCGACGGCGACGGCAGCCCCAGGGAGCGGCCGCATGCTGTATAGTCTCCAGCACCCAGGGGGGG
CAGCTGAGTTTTCCCACTCGTCCGGCATATTTGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis