Browse Element(s) Details


Os.11934.1.S1_at

Description gb:AK065711.1
DB_XREF= gi:32975729
TID=Os.11934.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039H05, full insert sequence.
FL= gb:AK065711.1 gb:AK066697.1 gb:AK073638.1 gb:AK104428.1 gb:AK105897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4400011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43870OsAffx.6128.1.S1_at1/118+27537096..27537800hypothetical protein
LOC_Os08g43880OsAffx.29652.1.S1_at10/118+27538505..27540487hypothetical protein
LOC_Os08g43890NANA8+27540755..27541480hypothetical protein
LOC_Os08g43900OsAffx.17506.1.S1_at11/118+27542747..27543534expressed protein
LOC_Os08g43910OsAffx.17506.1.S1_at4/118+27544799..27545407hypothetical protein
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11934.1.S1_at--847--8891Chr08:27565142..27565166 (25 bp)
TGAGATTTACTCGTCAGTTGACACG
LOC_Os08g44000
Os.11934.1.S1_at--386--1231Chr08:27565127..27565151 (25 bp)
AGTTGACACGGTTCTTCCAGTGGAC
LOC_Os08g44000
Os.11934.1.S1_at--707--2131Chr08:27565091..27565112 (22 bp)
ACAGACTGGCATTCTCAGAGGTCCT
LOC_Os08g44000
Os.11934.1.S1_at--733--1331Chr08:27564967..27564989 (23 bp)
AGAGGTCCTCTCCAGTGACACAATT
LOC_Os08g44000
Os.11934.1.S1_at--196--5631Chr08:27564951..27564975 (25 bp)
GACACAATTTTCTCAGTTCCAATGA
LOC_Os08g44000
Os.11934.1.S1_at--756--5251Chr08:27564928..27564952 (25 bp)
GAATGATACATACCAGCTTCTTGGG
LOC_Os08g44000
Os.11934.1.S1_at--515--7951Chr08:27564829..27564853 (25 bp)
GGATCTCAAGGCACAGTCCAAGCAA
LOC_Os08g44000
Os.11934.1.S1_at--703--10311Chr08:27564754..27564778 (25 bp)
TTTCTGATGCAGATCTGTGCTTCAA
LOC_Os08g44000
Os.11934.1.S1_at--805--7871Chr08:27564657..27564681 (25 bp)
GGTTATGTCTACAGAATCCCAACTA
LOC_Os08g44000
Os.11934.1.S1_at--89--3651Chr08:27564534..27564558 (25 bp)
CTTCTGCTTTTCTATAATCACGCGT
LOC_Os08g44000
Os.11934.1.S1_at--1136--3071Chr08:27564519..27564543 (25 bp)
AATCACGCGTTTTAGCATGACTAGT
LOC_Os08g44000
Target Sequence 
TGAGATTTACTCGTCAGTTGACACGGTTCTTCCAGTGGACAAATGATGTGGCTGACAGACTGGCATTCTCAGAGGTCCTC
TCCAGTGACACAATTTTCTCAGTTCCAATGAATGATACATACCAGCTTCTTGGGGTAGATTCAAAGGATATTCTCACCTT
AGAGAAGTATTTGCAAGATTACTTCACTAACATTTTAAANAAATTGAAGGATCTCAAGGCACAGTCCAAGCAAACTGACA
TATTCTTTTGACAAGAAGGATATCTACAAACCTATGGATATATTTTCTGATGCAGATCTGTGCTTCAAAACACAGATGAG
TGAATACAAATTTTCTTGTATATCTGTTGTTGTGGTATGTGCAAGAAGTGCATGCTATTAGGTTATGTCTACAGAATCCC
AACTATTGAACTATCAGGTCATGTATATAGGATCTCAACTATTCAACTATCAAAGACCTGGAGTTTGTGTAGATCAGACC
TAAATTCATGAATTCACAGTCAGCTTCTGCTTTTCTATAATCACGCGTTTTAGCATGACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis