Browse Element(s) Details


OsAffx.29653.1.S1_at

Description tigr:9636.m04486
TID=OsAffx.29653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29653.1.S1_at--114--931Chr08:27587371..27587395 (25 bp)
AGGCAGATCCAGCTACAGGATCCTA
LOC_Os08g44030
OsAffx.29653.1.S1_at--1126--8251Chr08:27587370..27587394 (25 bp)
GGCAGATCCAGCTACAGGATCCTAC
LOC_Os08g44030
OsAffx.29653.1.S1_at--351--1291Chr08:27587367..27587391 (25 bp)
AGATCCAGCTACAGGATCCTACCTC
LOC_Os08g44030
OsAffx.29653.1.S1_at--541--9211Chr08:27587364..27587388 (25 bp)
TCCAGCTACAGGATCCTACCTCGTG
LOC_Os08g44030
OsAffx.29653.1.S1_at--613--1571Chr08:27587361..27587385 (25 bp)
AGCTACAGGATCCTACCTCGTGCGG
LOC_Os08g44030
OsAffx.29653.1.S1_at--601--4831Chr08:27587360..27587384 (25 bp)
GCTACAGGATCCTACCTCGTGCGGT
LOC_Os08g44030
OsAffx.29653.1.S1_at--848--9851Chr08:27587358..27587382 (25 bp)
TACAGGATCCTACCTCGTGCGGTGG
LOC_Os08g44030
OsAffx.29653.1.S1_at--1099--8351Chr08:27587298..27587322 (25 bp)
GGCGGATCTGGAGCGTGGCGGAGAT
LOC_Os08g44030
OsAffx.29653.1.S1_at--930--3951Chr08:27587255..27587279 (25 bp)
CGGAGGATCCGGCACAGATGATGGC
LOC_Os08g44030
OsAffx.29653.1.S1_at--947--551Chr08:27587249..27587273 (25 bp)
ATCCGGCACAGATGATGGCGGTGGT
LOC_Os08g44030
OsAffx.29653.1.S1_at--75--11Chr08:27587195..27587219 (25 bp)
GGCGGGACGGTTCTACCGGCGGCTG
LOC_Os08g44030
Target Sequence 
AGGCAGATCCAGCTACAGGATCCTACCTCGTGCGGTGGGGGCGGTGGATGTGACGGCGATGACGACGGTGGGCGGCGGAT
CTGGAGCGTGGCGGAGATCGCGACGGCGGTCTCGACCGGAGGATCCGGCACAGATGATGGCGGTGGTGGCGGCGGCGGTC
TCAGGCGGCGGATCCGGGCGGGACGGTTCTACCGGCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis