Browse Element(s) Details


Os.19512.2.S1_x_at

Description gb:AK061264.1
DB_XREF= gi:32971282
TID=Os.19512.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C04, full insert sequence.
FL= gb:AK061264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3834011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os01g140102/11Zinc finger, C2H2 type family protein, expressed
LOC_Os01g708702/11Zinc finger, C2H2 type family protein, expressed
LOC_Os08g440501/11INDETERMINATE-related protein 1, putative, expressed
LOC_Os01g098501/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19512.2.S1_x_at--927--5531Chr09:22069158..22069276 (25 bp)
GAAACCCAAATCCAGATGCGGAGGT
LOC_Os09g38340
Os.19512.2.S1_x_at--1059--1435Chr01:7844980..7845004 (25 bp)
AGAACCTGCAGCTGCACCGGCGAGG
LOC_Os01g14010
Os.19512.2.S1_x_at--264--6133Chr01:7845001..7845025 (25 bp)
GAGGGCACAACCTGCCGTGGAAGCT
LOC_Os01g14010
Os.19512.2.S1_x_at--785--1431Chr09:22069002..22069026 (25 bp)
AGAAGAACCCCAAGGAGGCTCGCCG
LOC_Os09g38340
Os.19512.2.S1_x_at--750--1091Chr09:22068867..22068891 (25 bp)
AGTGGCGCTGCGACAAGTGCTCCAA
LOC_Os09g38340
Os.19512.2.S1_x_at--611--9571Chr09:22068762..22068786 (25 bp)
TCTTCTCCAGGTCCGTATGCTTCGA
LOC_Os09g38340
Os.19512.2.S1_x_at--393--7251Chr09:22068752..22068776 (25 bp)
GTCCGTATGCTTCGATCTTGATCTT
LOC_Os09g38340
Os.19512.2.S1_x_at--129--9271Chr09:22068728..22068752 (25 bp)
TCCTCGTCTCGTCCATGGATTGATT
LOC_Os09g38340
Os.19512.2.S1_x_at--481--7271Chr09:22068718..22068742 (25 bp)
GTCCATGGATTGATTCGTTCACGAT
LOC_Os09g38340
Os.19512.2.S1_x_at--562--11Chr09:22068706..22068730 (25 bp)
ATTCGTTCACGATCTAAGTTAATTA
LOC_Os09g38340
Os.19512.2.S1_x_at--1032--9331Chr09:22068679..22068703 (25 bp)
TCGAGTAATTGATCCATATCTTTGC
LOC_Os09g38340
Target Sequence 
GAAACCCAAATCCAGATGCGGAGGTGATAGCGCTGTCGCCGCGGACGCTGATGGCGACCAACAGGTTCGTGTGCGAGGTG
TGCAACAAGGGGTTCCAGCGGGAGCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTGAAGCAGAA
GAACCCCAAGGAGGCTCGCCGGCGCGTGTACCTGTGCCCGGAGCCGTCGTGCGTCCACCACGACCCGTCGCGGGCCCTCG
GCGACCTCACCGGGATCAAGAAGCACTACTGCCGCAAGCACGGCGAGAAGAAGTGGCGCTGCGACAAGTGCTCCAAGCGC
TACGCCGTGCAGTCCGACTGGAAGGCCCACTCCAAGACCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTT
CTCCAGGTCCGTATGCTTCGATCTTGATCTTCCTCGTCTCGTCCATGGATTGATTCGTTCACGATCTAAGTTAATTAATT
CGAGTAATTGATCCATATCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19512.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis