Browse Element(s) Details


Os.19512.3.S1_x_at

Description gb:AK101181.1
DB_XREF= gi:32986390
TID=Os.19512.3
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029F02, full insert sequence.
FL= gb:AK101181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3834011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os08g440501/11INDETERMINATE-related protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19512.3.S1_x_at--355--5172Chr09:22064491..22064515 (25 bp)
GCAAGCTGAGCACGAGGGACTTCCT
LOC_Os09g38340
Os.19512.3.S1_x_at--444--9411Chr09:22064455..22064479 (25 bp)
TCGTCCAGGGCATCAGCGGCTCGGC
LOC_Os09g38340
Os.19512.3.S1_x_at--781--1951Chr09:22064382..22064406 (25 bp)
ACTGGACCCGGCAAACATGAACTGA
LOC_Os09g38340
Os.19512.3.S1_x_at--1000--6431Chr09:22064312..22064336 (25 bp)
GATCATGCTGCTAATTTCATTTCAT
LOC_Os09g38340
Os.19512.3.S1_x_at--442--3051Chr09:22064200..22064224 (25 bp)
AATCTGGAGCTGTTAATGGTGAGTC
LOC_Os09g38340
Os.19512.3.S1_x_at--977--7371Chr09:22064182..22064206 (25 bp)
GTGAGTCGTAGTTGCTAGCTAGCTA
LOC_Os09g38340
Os.19512.3.S1_x_at--746--7531Chr09:22064119..22064143 (25 bp)
GTGGCCAGAACTTAATTTTGTACCG
LOC_Os09g38340
Os.19512.3.S1_x_at--879--6811Chr09:22064081..22064105 (25 bp)
GTTTTTCATGTACTTTTGGCAGGGA
LOC_Os09g38340
Os.19512.3.S1_x_at--31--10251Chr09:22064067..22064091 (25 bp)
TTTGGCAGGGAAATGGGTCTCTTTT
LOC_Os09g38340
Os.19512.3.S1_x_at--396--811Chr09:22064055..22064079 (25 bp)
ATGGGTCTCTTTTGATGTGAAGTCA
LOC_Os09g38340
Os.19512.3.S1_x_at--345--8691Chr09:22064040..22064064 (25 bp)
TGTGAAGTCATCATGTGAAGGCCTG
LOC_Os09g38340
Target Sequence 
GCAAGCTGAGCACGAGGGACTTCCTCGGCGTCGGCGNTCGTCCAGGGCATCAGCGGCTCGGCGGCAATGGGGCCGCCGCG
CCATGGCGCGGCCGGCCTCCACGTCGGCTCACTGGACCCGGCAAACATGAACTGAAGTCATCNCAGAGAAGAAAAAAAAC
NATAGAAGANGGAAGGAGATGATCATGCTGCTAATTTCATTTCATCATATCAGAATTAGTCAAGAAACTGGAGGTAATTA
ATTAAGAAGAGAAAAGCGATNTCAATCCATGCAAGATGGATGTTTNTGGGGAAATCTGGAGCTGTTAATGGTGAGTCGTA
GTTGCTAGCTAGCTAGCCAGAGCTGGGAGGAATAATAATAATACCTGGATTAAGTGGCCAGAACTTAATTTTGTACCGGT
ACATTTCGTTTGTTTTTCATGTACTTTTGGCAGGGAAATGGGTCTCTTTTGATGTGAAGTCATCATGTGAAGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19512.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis