Browse Element(s) Details


Os.53985.1.S1_at

Description gb:AK101142.1
DB_XREF= gi:32986351
TID=Os.53985.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026M22, full insert sequence.
FL= gb:AK101142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38268OsAffx.26522.2.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38268Os.54279.1.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38300OsAffx.6517.1.S1_at11/119+22034063..22035817Kelch motif family protein
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53985.1.S1_at--1113--4771Chr09:22048668..22048692 (25 bp)
GCTCCAAACTATTTCCCATACTTTA
LOC_Os09g38330
Os.53985.1.S1_at--853--6991Chr09:22048605..22048629 (25 bp)
GTACTGCATTGTAGCAAGTGCCACG
LOC_Os09g38330
Os.53985.1.S1_at--959--3091Chr09:22048458..22048599 (25 bp)
AATACGTTCCGCAACTCCGATTGTA
LOC_Os09g38330
Os.53985.1.S1_at--264--5551Chr09:22048386..22048410 (25 bp)
GAAAGCTGCGTTAGTCATTGATGAA
LOC_Os09g38330
Os.53985.1.S1_at--64--2711Chr09:22048304..22048328 (25 bp)
AAGCTTTCTTCTTCATACCGTGGAT
LOC_Os09g38330
Os.53985.1.S1_at--682--7611Chr09:22048269..22048293 (25 bp)
GGGAAAAGTCACACAACTGCATCAA
LOC_Os09g38330
Os.53985.1.S1_at--802--6591Chr09:22048220..22048244 (25 bp)
GATTGATTTCATTTATGGCCGCTAG
LOC_Os09g38330
Os.53985.1.S1_at--217--871Chr09:22048206..22048230 (25 bp)
ATGGCCGCTAGATATTCTTTGATTG
LOC_Os09g38330
Os.53985.1.S1_at--1--5011Chr09:22048173..22048197 (25 bp)
GCATGGATGAACAAGCTCTCGTGGC
LOC_Os09g38330
Os.53985.1.S1_at--286--91Chr09:22048136..22048160 (25 bp)
ATTCCAGCTGAGTATGTGATTTTCC
LOC_Os09g38330
Os.53985.1.S1_at--861--8771Chr09:22048078..22048102 (25 bp)
TGTTTCCTGTCACCGTCAGTATCAC
LOC_Os09g38330
Target Sequence 
GCTCCAAACTATTTCCCATACTTTATTGGTAAAGTTGTACACTTGTACTACACATAAGTTGGAGTACTGCATTGTAGCAA
GTGCCACGACCACAATACGTTCCGCAACTCCGATTGTACATAGATGCCTGTTGGAAGCACTGTTGTAGAGTTGAAGCTAG
TTTCTGAAAGCTGCGTTAGTCATTGATGAAATTTTTGACGCAAAGTCATTGGTGAATTGTGTATATAATCCCAAGAAGAA
TGGGATGAAGCTTTCTTCTTCATACCGTGGATGTGGAAATCAGGGAAAAGTCACACAACTGCATCAAGCATATGCTACAT
GAAGTAGGTTTGATTGATTTCATTTATGGCCGCTAGATATTCTTTGATTGGACTCAATGCATGGATGAACAAGCTCTCGT
GGCTTTGCCCCCTCAATTCCAGCTGAGTATGTGATTTTCCACATATGGGGTCCCACAGCACCCTTCCCTTCTCTGTTTCC
TGTCACCGTCAGTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis