Browse Element(s) Details


OsAffx.6517.1.S1_at

Description tigr:9637.m03266
TID=OsAffx.6517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3830011/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38210Os.13580.1.A1_at4/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38210Os.49579.1.S1_at1/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38239Os.15407.1.S1_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38239OsAffx.30188.1.S1_s_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38268OsAffx.26522.2.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38268Os.54279.1.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38300OsAffx.6517.1.S1_at11/119+22034063..22035817Kelch motif family protein
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6517.1.S1_at--1115--3891Chr09:22035221..22035245 (25 bp)
CTGGTGTCCGGCGAGATCTATGATC
LOC_Os09g38300
OsAffx.6517.1.S1_at--625--4071Chr09:22035232..22035256 (25 bp)
CGAGATCTATGATCCGGTGACGGAC
LOC_Os09g38300
OsAffx.6517.1.S1_at--316--5611Chr09:22035254..22035278 (25 bp)
GACAAGTGGTTCGAGATCGCCGGCT
LOC_Os09g38300
OsAffx.6517.1.S1_at--76--4511Chr09:22035311..22035335 (25 bp)
GCCGTCTGTGGCCAGATGTTCTACG
LOC_Os09g38300
OsAffx.6517.1.S1_at--554--6131Chr09:22035325..22035349 (25 bp)
GATGTTCTACGTGTACTGCGAGTCG
LOC_Os09g38300
OsAffx.6517.1.S1_at--100--8751Chr09:22035336..22035360 (25 bp)
TGTACTGCGAGTCGGACACGCTCGT
LOC_Os09g38300
OsAffx.6517.1.S1_at--178--9371Chr09:22035372..22035396 (25 bp)
TCGACAAGGGCTTCTGGTCCGTCAT
LOC_Os09g38300
OsAffx.6517.1.S1_at--6--9131Chr09:22035465..22035489 (25 bp)
TGCTGATGCTCTGCGTCTCGTGGTG
LOC_Os09g38300
OsAffx.6517.1.S1_at--1075--4011Chr09:22035643..22035667 (25 bp)
CGTCTACGCCGTGGAGATGTTCAGG
LOC_Os09g38300
OsAffx.6517.1.S1_at--848--731Chr09:22035659..22035683 (25 bp)
ATGTTCAGGGTCTTCGGCAAGGTGC
LOC_Os09g38300
OsAffx.6517.1.S1_at--808--7311Chr09:22035680..22035704 (25 bp)
GTGCTCGACTTCGTGACGGCGTGCC
LOC_Os09g38300
Target Sequence 
CTGGTGTCCGGCGAGATCTATGATCCGGTGACGGACAAGTGGTTCGAGATCGCCGGCTTCCCCGCCGACGTCGGGCTCGC
CTGCTCCGGCGCCGTCTGTGGCCAGATGTTCTACGTGTACTGCGAGTCGGACACGCTCGTCGCCTACCACCTCGACAAGG
GCTTCTGGTCCGTCATCCAGACGTCCCGCCCGCCGCCGCGGCTCCGCGACTACGCGCCGACGCTGCTGTGCTGCTCGTCG
CGGCTGCTGATGCTCTGCGTCTCGTGGTGCGACCGCGCCGGCAACGGCTCGGCGAGCCGGCGGGAGAGGGTGATGCGCAA
GCTGTTCGAGCTCGACCTCGGCTCGCGCCGGTGGGGCGAGGCGTCGTCGCACCCCGACGCGCCCATGGACCTCAACGCCG
CGTTCGCCGCCGGCGCGGACACCGTCTACGCCGTGGAGATGTTCAGGGTCTTCGGCAAGGTGCTCGACTTCGTGACGGCG
TGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis