Browse Element(s) Details


Os.13580.1.A1_at

Description gb:CA762475
DB_XREF= gi:25806514
DB_XREF=BR060006A20H09.ab1
CLONE=BR060006A20H09.ab1
TID=Os.13580.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13580 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201399.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g205109/11Auxin Efflux Carrier family protein
LOC_Os09g382104/11Auxin Efflux Carrier family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20470Os.45173.5.S1_x_at4/117+11819215..11820566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20480NANA7+11824361..11826315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20490NANA7+11829242..11832188retrotransposon protein, putative, unclassified
LOC_Os07g20500NANA7+11834913..11836922retrotransposon protein, putative, unclassified
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13580.1.A1_at--648--7672Chr09:22008961..22008985 (25 bp)
GGGATTGCAGTAGTTCATGGTGCAT
LOC_Os09g38210
Os.13580.1.A1_at--920--10532Chr09:22008974..22008998 (25 bp)
TTCATGGTGCATACTGGGTCGGATT
LOC_Os09g38210
Os.13580.1.A1_at--879--812Chr09:22008977..22009001 (25 bp)
ATGGTGCATACTGGGTCGGATTCTT
LOC_Os09g38210
Os.13580.1.A1_at--673--7332Chr09:22008980..22009004 (25 bp)
GTGCATACTGGGTCGGATTCTTGCC
LOC_Os09g38210
Os.13580.1.A1_at--465--10251Chr07:11849742..11849766 (25 bp)
TTTGATGTTGCCCAGGAGGAATGCT
LOC_Os07g20510
Os.13580.1.A1_at--311--731Chr07:11849746..11849770 (25 bp)
ATGTTGCCCAGGAGGAATGCTCAGT
LOC_Os07g20510
Os.13580.1.A1_at--322--8211Chr07:11849759..11849783 (25 bp)
GGAATGCTCAGTGATATTTCTGTGG
LOC_Os07g20510
Os.13580.1.A1_at--127--771Chr07:11849832..11849856 (25 bp)
ATGTCCATCCCGTCTTTAGGTCAAA
LOC_Os07g20510
Os.13580.1.A1_at--696--4271Chr07:11849836..11849860 (25 bp)
CCATCCCGTCTTTAGGTCAAAGTGC
LOC_Os07g20510
Os.13580.1.A1_at--107--5291Chr07:11850043..11850067 (25 bp)
GAATGGTTTTCATCTTTTAAGGGAT
NONE
Os.13580.1.A1_at--865--3551Chr07:11850053..11850077 (25 bp)
CATCTTTTAAGGGATATTCAAATTC
NONE
Target Sequence 
GGGATTGCAGTAGTTCATGGTGCATACTGGGTCGGATTCTTGCCNCACGACCCGCTGTACCGCTACGTGCTGATGATNCA
GTTCGCGCTGCCACCTGCAATGACTATTGGAACCATGGCTCAACTGTTTGATGTTGCCCAGGAGGAATGCTCAGTGATAT
TTCTGTGGACTTACCTGGTTTNTTCCATTTCTCTCACCACCTGGTCCNTGATATTCATGTCCATCCCGTCTTTAGGTCAA
AGTGCNATGATTTNAGCNTTTNAGCTAACTCAAAGGGAGGAGGTTGAAGNCAATAATACGCCTNTAGAAAAGAGTCGATC
CNACTGANGCTTGTTCGTGTCNCCGTTTGCNCCNCCTGTATAAAAGAAGTTGAGCAGTTTNGGCNCNCGGTTTTTTTTNT
ATCCCNATNTATTGGTTCATTTAATTGGAATGGTTTTCATCTTTTAAGGGATATTCAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13580.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis