Browse Element(s) Details


Os.50323.1.S1_at

Description gb:AK120733.1
DB_XREF= gi:37990356
TID=Os.50323.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003D10, full insert sequence.
FL= gb:AK120733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2051011/11Auxin Efflux Carrier family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20470Os.45173.5.S1_x_at4/117+11819215..11820566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20480NANA7+11824361..11826315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20490NANA7+11829242..11832188retrotransposon protein, putative, unclassified
LOC_Os07g20500NANA7+11834913..11836922retrotransposon protein, putative, unclassified
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50323.1.S1_at--341--5531Chr07:11846764..11846788 (25 bp)
GAAAACTTCAGAAAGCGCTGCCCGC
LOC_Os07g20510
Os.50323.1.S1_at--1157--3151Chr07:11846830..11846854 (25 bp)
AATTCCTCTTGATGTGGTTGATGAC
LOC_Os07g20510
Os.50323.1.S1_at--563--5611Chr07:11846888..11846912 (25 bp)
GACAAGGCTTTAATGCTGCGAGATG
LOC_Os07g20510
Os.50323.1.S1_at--242--3831Chr07:11846903..11846927 (25 bp)
CTGCGAGATGTTATTGTTGCGAAAA
LOC_Os07g20510
Os.50323.1.S1_at--149--2331Chr07:11846925..11846949 (25 bp)
AAAGTGCACCAATGGGCTGCTCGTC
LOC_Os07g20510
Os.50323.1.S1_at--297--4811Chr07:11846943..11846967 (25 bp)
GCTCGTCCTATCTTGCTATAGTGGA
LOC_Os07g20510
Os.50323.1.S1_at--1147--7451Chr07:11846963..11846987 (25 bp)
GTGGACAATCTATGCCGGAAGGGAA
LOC_Os07g20510
Os.50323.1.S1_at--1096--6011Chr07:11847028..11847052 (25 bp)
GAGAGGTATTTGTCCCAGTGAGAAT
LOC_Os07g20510
Os.50323.1.S1_at--650--5131Chr07:11847156..11847180 (25 bp)
GCAAATTCTGTAATTCAGCTGGTGA
LOC_Os07g20510
Os.50323.1.S1_at--1011--5931Chr07:11847214..11847238 (25 bp)
GAGCAGAATCCTTCCTATAAAAGAA
LOC_Os07g20510
Os.50323.1.S1_at--539--5271Chr07:11847264..11847288 (25 bp)
GAATGCATGTCGTAGCCTTGTTTTT
LOC_Os07g20510
Target Sequence 
GAAAACTTCAGAAAGCGCTGCCCGCCACTTTTCCTCATTGTTTATGGACATGATAAATCAAGGAAAAATTCCTCTTGATG
TGGTTGATGACATGATTCGAGATCATTGTAAAGAAGGAAATCTGGACAAGGCTTTAATGCTGCGAGATGTTATTGTTGCG
AAAAGTGCACCAATGGGCTGCTCGTCCTATCTTGCTATAGTGGACAATCTATGCCGGAAGGGAAAATTAAGTGAAGCGTT
GAATTTGCTGAAAGAAATGGACAAGAGAGGTATTTGTCCCAGTGAGAATCAATGCTTGATACTATTAACTAATCTTCATA
CATCTGGATATATCCAAGAACACAATACGGTACTTGATAATATGTTGTGTCACAAGTGGTTACAGAAGGACAGCAAATTC
TGTAATTCAGCTGGTGATAATCTGGAATCTGTCAATGCAGAATAAACATAGAGCAGAATCCTTCCTATAAAAGAAAGTCT
GATTCTATTATTCATGTTGCGAATGCATGTCGTAGCCTTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis