Browse Element(s) Details


Os.49205.1.S1_at

Description gb:AK061941.1
DB_XREF= gi:32971959
TID=Os.49205.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D10, full insert sequence.
FL= gb:AK061941.1 gb:AK102162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2054411/11aspartate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49205.1.S1_at--64--5051Chr07:11864572..11864596 (25 bp)
GCAGAGGTCATCTTTGATTCTTGAA
LOC_Os07g20544
Os.49205.1.S1_at--42--3591Chr07:11864187..11864211 (25 bp)
CATTTCCTTGGTGGTCCATGACAGT
LOC_Os07g20544
Os.49205.1.S1_at--802--6011Chr07:11864120..11864144 (25 bp)
GAGAGTGGTTTCTTGCCAGAAGTCA
LOC_Os07g20544
Os.49205.1.S1_at--83--10231Chr07:11864091..11864115 (25 bp)
TATTCTGCAGGACGACTCTGTGGCA
LOC_Os07g20544
Os.49205.1.S1_at--562--7531Chr07:11864072..11864096 (25 bp)
GTGGCACATTCCAATGGCACAGTTT
LOC_Os07g20544
Os.49205.1.S1_at--636--8231Chr07:11864057..11864081 (25 bp)
GGCACAGTTTACAGGCATTAGTCAG
LOC_Os07g20544
Os.49205.1.S1_at--639--6791Chr07:11864006..11864030 (25 bp)
GTTATACCATTTGCAGCCTCAGAAT
LOC_Os07g20544
Os.49205.1.S1_at--863--5251Chr07:11863985..11864009 (25 bp)
GAATCTGATCGTTCTCAGGCTAAAA
LOC_Os07g20544
Os.49205.1.S1_at--113--5311Chr07:11863942..11863966 (25 bp)
GAAGGAGCAATTCCGGCTTTTTATA
LOC_Os07g20544
Os.49205.1.S1_at--170--9551Chr07:11863913..11863937 (25 bp)
TCTAGTTGGCTCTGGTTTACTACCA
LOC_Os07g20544
Os.49205.1.S1_at--603--1731Chr07:11863875..11863899 (25 bp)
ACCATTGTTACCATTCTTTGCAGAG
LOC_Os07g20544
Target Sequence 
GCAGAGGTCATCTTTGATTCTTGAAAAGGCTTTCAACGTTTTACGTACAAATGGAGTTAATGTTCAGATGATCTCACAAG
GGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTTCAAGCCCTCCACTCAGCATTC
TTTGAGAGTGGTTTCTTGCCAGAAGTCAATGATATTCTGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAG
GCATTAGTCAGAAGTTTAATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGGCTA
AAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAATG
GGCATACTACCATTGTTACCATTCTTTGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis