Browse Element(s) Details


OsAffx.31822.1.S1_at

Description tigr:9640.m02019
TID=OsAffx.31822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2038010/11hypothetical protein
LOC_Os07g205801/11ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os01g502201/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20340OsAffx.27737.1.S1_at2/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20340OsAffx.30486.1.S1_at1/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20410Os.10969.1.S1_at11/1112+11912727..11915931MAR-binding protein, putative, expressed
LOC_Os12g20420OsAffx.11270.1.S1_x_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.11270.1.S1_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.2.S1_at2/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.3.S1_x_at1/1112+11920621..11923876SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31822.1.S1_at--1065--2672Chr12:11898333..11898357 (25 bp)
AAGCTCCAGCGGTGGGAAGACCTCG
LOC_Os12g20380
OsAffx.31822.1.S1_at--696--1851Chr12:11898392..11898604 (25 bp)
ACGACAACGCCAGGACCAAACATTG
LOC_Os12g20380
OsAffx.31822.1.S1_at--730--10099Chr12:11898684..11898708 (25 bp)
TAGGCAACAACCAAACAGACCCGTA
LOC_Os12g20380
OsAffx.31822.1.S1_at--432--2491Chr12:11898697..11898721 (25 bp)
AACAGACCCGTAATCTTCGCTCGGT
LOC_Os12g20380
OsAffx.31822.1.S1_at--51--10652Chr12:14962392..14962416 (25 bp)
TTCGCTCGGTCTTCACGCGTGGAGA
NONE
OsAffx.31822.1.S1_at--792--1291NONE
AGATGGGTGGACGATTATTGAACAA
NONE
OsAffx.31822.1.S1_at--43--2792Chr12:11899596..11899620 (25 bp)
AAGAGATCAAATCCGATCCGATCCA
LOC_Os12g20380
OsAffx.31822.1.S1_at--1155--4032Chr12:11899609..11899633 (25 bp)
CGATCCGATCCAAGAATTACGCAAA
LOC_Os12g20380
OsAffx.31822.1.S1_at--1123--3072Chr12:11899652..11899676 (25 bp)
AATCACAAAAAAACCGGCGCCACTG
LOC_Os12g20380
OsAffx.31822.1.S1_at--1010--4551Chr12:11899668..11899692 (25 bp)
GCGCCACTGCTCACATCAGAGGCAA
LOC_Os12g20380
OsAffx.31822.1.S1_at--481--9091Chr12:11899675..11899699 (25 bp)
TGCTCACATCAGAGGCAAGCACGCC
LOC_Os12g20380
Target Sequence 
AAGCTCCAGCGGTGGGAAGACCTCGCCTCTCGTTCAGTGCGCGCCGGCGGCGGAAGGGGACGACAACGCCAGGACCAAAC
ATTGCCACACTTGTGGCCAACAAATTGTTGGCCACACTTTGTTTGCCATGCCACACCTATGGCAAACTGAGTTATGGCAA
TGTTAGGCAACAACCAAACAGACCCGTAATCTTCGCTCGGTCTTCACGCGTGGAGAGGGTGAAATCGTGCGGTGGAGATG
GGTGGACGATTATTGAACAAGAGATCAAATCCGATCCGATCCAAGAATTACGCAAAGAAACAAGAGAATCACAAAATCAC
AAAAAAACCGGCGCCACTGCTCACATCAGAGGCAAGCACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis