Browse Element(s) Details


OsAffx.30486.1.S1_at

Description tigr:9638.m01820
TID=OsAffx.30486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2171010/11hypothetical protein
LOC_Os09g042603/11retrotransposon protein, putative, unclassified
LOC_Os08g290801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g258501/11retrotransposon protein, putative, unclassified
LOC_Os11g167301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g149901/11retrotransposon protein, putative, unclassified
LOC_Os10g390801/11retrotransposon protein, putative, LINE subclass
LOC_Os12g203401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g223001/11transposon protein, putative, unclassified
LOC_Os02g157201/11hypothetical protein
LOC_Os08g226501/11retrotransposon protein, putative, unclassified
LOC_Os12g202201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g020401/11hypothetical protein
LOC_Os04g186401/11retrotransposon protein, putative, unclassified
LOC_Os06g027001/11retrotransposon protein, putative, unclassified
LOC_Os04g013701/11retrotransposon protein, putative, unclassified
LOC_Os10g104501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g337301/11hypothetical protein
LOC_Os07g154101/11hypothetical protein
LOC_Os12g143741/11retrotransposon protein, putative, unclassified
LOC_Os07g272001/11retrotransposon protein, putative, unclassified
LOC_Os04g187301/11retrotransposon protein, putative, unclassified
LOC_Os11g184101/11hypothetical protein
LOC_Os10g244501/11retrotransposon protein, putative, unclassified
LOC_Os12g037601/11retrotransposon protein, putative, unclassified
LOC_Os10g222001/11hypothetical protein
LOC_Os05g082801/11retrotransposon protein, putative, unclassified
LOC_Os10g018501/11retrotransposon, putative, centromere-specific
LOC_Os11g086891/11
LOC_Os02g093001/11hypothetical protein
LOC_Os08g236541/11retrotransposon protein, putative, unclassified
LOC_Os10g365101/11hypothetical protein
LOC_Os07g272201/11hypothetical protein
LOC_Os03g329401/11transposon protein, putative, unclassified
LOC_Os02g212001/11hypothetical protein
LOC_Os07g272301/11retrotransposon protein, putative, unclassified
LOC_Os09g031101/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0006278biological_processRNA-dependent DNA replication
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003723molecular_functionRNA binding
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30486.1.S1_at--1104--10031Chr10:10801403..10801427 (25 bp)
TAGAGATAACTGTCATGTCCGGCAA
LOC_Os10g21710
OsAffx.30486.1.S1_at--514--6471Chr10:10801399..10801423 (25 bp)
GATAACTGTCATGTCCGGCAAGGAC
LOC_Os10g21710
OsAffx.30486.1.S1_at--1118--107914Chr12:20327375..20327512 (25 bp)
TTGTAATCTCAGGTTTTCATCATCT
LOC_Os12g33730
OsAffx.30486.1.S1_at--449--68124Chr10:20819691..20819714 (24 bp)
GTTTTCATCATCTTGCCTAGATCTC
NONE
OsAffx.30486.1.S1_at--526--10697Chr02:19713402..19713421 (20 bp)
TTGCCTAGATCTCATACTTGTCTTT
NONE
OsAffx.30486.1.S1_at--79--2075Chr10:12380745..12381016 (25 bp)
ACTTGTCTTTATGTTTAATGCTGCA
NONE
OsAffx.30486.1.S1_at--950--30124Chr12:12421836..12422078 (25 bp)
AATGCTGCATCGTATCTTAATATAG
NONE
OsAffx.30486.1.S1_at--1059--81921Chr12:4680875..4680896 (22 bp)
GGAATCGGAGTACTAGCCGATACAT
NONE
OsAffx.30486.1.S1_at--111--451343Chr12:1035904..1035928 (25 bp)
GCCGATACATGCTAGATCTATCTGA
NONE
OsAffx.30486.1.S1_at--779--3691NONE
CTATCTGATCGGGAGGATGATTATC
NONE
OsAffx.30486.1.S1_at--396--10252Chr10:10798229..10798253 (25 bp)
TTTGGGACTAGTTTGGAAGAGGCAT
LOC_Os10g21710
Target Sequence 
TAGAGATAACTGTCATGTCCGGCAAGGACATATTTTGTAATCTCAGGTTTTCATCATCTTGCCTAGATCTCATACTTGTC
TTTATGTTTAATGCTGCATCGTATCTTAATATAGAGTGGAATCGGAGTACTAGCCGATACATGCTAGATCTATCTGATCG
GGAGGATGATTATCTAGATTTTGAGCTATTGAGGATGATATTTGGGACTAGTTTGGAAGAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis