Browse Element(s) Details


OsAffx.20453.1.S1_at

Description gb:NM_196034.1
DB_XREF= gi:37533427
TID=OsAffx.20453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein retrotransposable elements TNP2 protein (OSJNBa0058E19.9), mRNA.
PROD=putative protein retrotransposable elements TNP2protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g217007/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20453.1.S1_at--440--8371Chr10:10795803..10795827 (25 bp)
GGCGTCAAACCTAGACATTTCACTG
LOC_Os10g21700
OsAffx.20453.1.S1_at--442--10191Chr10:10796850..10796869 (20 bp)
TATTTGGATTGGAGCCCGTGGTAAA
LOC_Os10g21700
OsAffx.20453.1.S1_at--804--2791Chr10:10796869..10796893 (25 bp)
AAGATGGCCCATATGCAGTCGACAT
LOC_Os10g21700
OsAffx.20453.1.S1_at--289--5931Chr10:10796898..10796922 (25 bp)
GAGCAGGCAACACCATGCATTCTTA
LOC_Os10g21700
OsAffx.20453.1.S1_at--460--5331Chr10:10796928..10796952 (25 bp)
GAAGTGATTCCATCATTTGCTGTGG
LOC_Os10g21700
OsAffx.20453.1.S1_at--894--2871Chr10:10796961..10796985 (25 bp)
AAGTGGAAGGCATACCCTCCGCTGA
LOC_Os10g21700
OsAffx.20453.1.S1_at--550--5531Chr10:10796991..10797011 (21 bp)
GAAACAATTCACCATGCTCAACACT
LOC_Os10g21700
OsAffx.20453.1.S1_at--50--9091NONE
TGCTCAACACTCACTTGGATCTGTA
NONE
OsAffx.20453.1.S1_at--480--7972Chr10:10798339..10798363 (25 bp)
GGATCTGTACTTCCATGCGTTGGCC
NONE
OsAffx.20453.1.S1_at--934--9371Chr10:10798602..10798626 (25 bp)
TCGAGCTTGGACTGCCGGCGAAGAA
NONE
OsAffx.20453.1.S1_at--590--5832Chr10:10798652..10798676 (25 bp)
GACCGGCTAACTCCTTGGATGAAGA
NONE
Target Sequence 
GGCGTCAAACCTAGACATTTCACTGGAAGGCAGGTACATGACATGGTAAAGGACATCAGTAATGTATTTGGATTGGAGCC
CGTGGTAAAAGATGGCCCATATGCAGTCGACATGCTCGAGCAGGCAACACCATGCATTCTTAAAGTTGAAGTGATTCCAT
CATTTGCTGTGGAGGCAGCCAAGTGGAAGGCATACCCTCCGCTGAATACAGAAACAATTCACCATGCTCAACACTCACTT
GGATCTGTACTTCCATGCGTTGGCCTGCATCACGGTGGAGGTGGAGGAGCAGCAACCGTGTGGTGCCCGCCGGTTGCCGG
AGCTCGCTCTTTGGCTGCAGGCTACCAAGAAAAGACATGCATGAATGGAGAAGATGGAAGTATGGTGGGAGCAACGACTC
CGAACTGCCGCGTCAGGAGCAGCAGCTGTCAGGTGCTTGCTTGCTGCAGCCAGTCGCTGGAGCTCGAGCTTGGACTGCCG
GCGAAGAAATGGCAGCCGCTGGACGCCGGTGCCGACCGGCTAACTCCTTGGATGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis