Browse Element(s) Details


OsAffx.11259.1.S1_at

Description tigr:9629.m02865
TID=OsAffx.11259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g298208/11expressed protein
LOC_Os05g140603/11retrotransposon protein, putative, unclassified
LOC_Os08g108902/11hypothetical protein
LOC_Os03g340302/11hypothetical protein
LOC_Os11g085501/11retrotransposon protein, putative, unclassified
LOC_Os05g082801/11retrotransposon protein, putative, unclassified
LOC_Os04g284401/11hypothetical protein
LOC_Os10g217101/11hypothetical protein
LOC_Os05g247101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g137501/11retrotransposon protein, putative, unclassified
LOC_Os04g013701/11retrotransposon protein, putative, unclassified
LOC_Os02g243701/11hypothetical protein
LOC_Os12g201901/11retrotransposon protein, putative, unclassified
LOC_Os03g266901/11hypothetical protein
LOC_Os09g042601/11retrotransposon protein, putative, unclassified
LOC_Os06g457601/11retrotransposon protein, putative, unclassified
LOC_Os02g143201/11retrotransposon protein, putative, unclassified
LOC_Os01g280001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29770NANA1+17010747..17011072hypothetical protein
LOC_Os01g29780Os.31845.2.S1_x_at1/111+17014563..17016473retrotransposon protein, putative, unclassified
LOC_Os01g29790OsAffx.7834.1.S1_at10/111+17016884..17020481hypothetical protein
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11259.1.S1_at--324--331Chr01:17035153..17035245 (25 bp)
ATACTCACCTGCACTATTAATGGTT
LOC_Os01g29820
OsAffx.11259.1.S1_at--955--3811NONE
CTCCATTTCACAATTATCAGAGATG
NONE
OsAffx.11259.1.S1_at--916--8135Chr05:24687579..24687598 (20 bp)
GGACAAGGGTAGTATCGAGGTTTCA
NONE
OsAffx.11259.1.S1_at--25--4594Chr12:5971957..5971980 (24 bp)
ATCTTACCTGATTTAGCTTTATATC
NONE
OsAffx.11259.1.S1_at--589--4893Chr01:17036921..17036945 (25 bp)
GCTTTATATCTTACATGCTTAATTG
LOC_Os01g29820
OsAffx.11259.1.S1_at--653--31728Chr12:17195683..17195729 (24 bp)
AATTGATATGCTAGATCTGCCCTTT
NONE
OsAffx.11259.1.S1_at--848--101335Chr12:5971998..5972022 (25 bp)
TATGCTAGATCTGCCCTTTATGTTA
NONE
OsAffx.11259.1.S1_at--645--94963Chr12:5972007..5972031 (25 bp)
TCTGCCCTTTATGTTAAGATCTTAT
NONE
OsAffx.11259.1.S1_at--771--9851NONE
TACAACAAAGTTTCTCGCAGCAGTG
NONE
OsAffx.11259.1.S1_at--511--3291Chr01:17037628..17037648 (21 bp)
CAAAGTTTCTCGCAGCAGTGAACAG
LOC_Os01g29820
OsAffx.11259.1.S1_at--332--6831NONE
GTTTCACTCTATCAGCAGTTTGTTA
NONE
Target Sequence 
ATACTCACCTGCACTATTAATGGTTCAAGTTTAGTTATGATATGGTGCTGCCATCTTGCTAACAATAGTGCTAACTGCTA
CTTCCTCCATTTCACAATTATCAGAGATGGAGATAAAATTGAGGCGGAATCCAAGATGGAAGTCGTTCTGGAAACAGAGC
AAGGATCTGCTAAAGTCCGCATCTGCTATGACCGGGATCGGCAGAGTCCGAGTTGGACAAGGGTAGTATCGAGGTTTCAG
CCGATCTTACCTGATTTAGCTTTATATCTTACATGCTTAATTGATATGCTAGATCTGCCCTTTATGTTAAGATCTTATTA
CAACAAAGTTTCTCGCAGCAGTGAACAGAATTTAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCAC
TCTATCAGCAGTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis