Browse Element(s) Details


OsAffx.11234.1.S1_x_at

Description tigr:9629.m02664
TID=OsAffx.11234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2785011/11hypothetical protein
LOC_Os01g298001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27820NANA1+15861067..15862593hypothetical protein
LOC_Os01g27834NANA1+15867056..15867403hypothetical protein
LOC_Os01g27850OsAffx.11234.1.S1_x_at11/111+15883978..15884409hypothetical protein
LOC_Os01g27860NANA1+15889681..15890013hypothetical protein
LOC_Os01g27880Os.13071.1.S1_at11/111+15895754..15900213sucrose-phosphatase, putative, expressed
LOC_Os01g27890Os.47994.1.S1_x_at11/111+15908865..15910491Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11234.1.S1_x_at--462--5751Chr01:15884015..15884039 (25 bp)
GACGGAGGCGACAGCACACCGTGAG
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--586--2151Chr01:15884025..15884049 (25 bp)
ACAGCACACCGTGAGGAGGTCGGAA
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--650--1392Chr01:15884027..15884051 (25 bp)
AGCACACCGTGAGGAGGTCGGAAAC
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--243--7531Chr01:15884122..15884146 (25 bp)
GTGGCGATTTGGGAAAACCAAGCAA
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--1108--10211Chr01:15884129..15884153 (25 bp)
TTTGGGAAAACCAAGCAAAGGCCAG
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--850--3291Chr01:15884144..15884168 (25 bp)
CAAAGGCCAGTGTGCGGCAAGGCAT
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--393--8011Chr01:15884232..15884256 (25 bp)
GGAGGCGGCAAAAGCACCGGCGGCT
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--1138--3872Chr01:15884261..15884285 (25 bp)
CTGTGCGTGGACACGGCATCACGGC
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--846--371Chr01:15884278..15884302 (25 bp)
ATCACGGCGGTGGTTCAGGGAAATA
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--627--10532Chr01:15884291..15884315 (25 bp)
TTCAGGGAAATAAAGTGGATGCCGG
LOC_Os01g27850
OsAffx.11234.1.S1_x_at--696--8531Chr01:15884318..15884342 (25 bp)
TGGAGCTCGGGACGGCGAGGCTAGC
LOC_Os01g27850
Target Sequence 
GACGGAGGCGACAGCACACCGTGAGGAGGTCGGAAACGACGGCAAGAGGTGGCCGGAGGCGACAGTCACGGCGGCGACCT
CGGGTTCACGGTGGGGTGGTAGATGCGGTGGCGATTTGGGAAAACCAAGCAAAGGCCAGTGTGCGGCAAGGCATGGCGAT
GCCGACGGCGGTGTTTGCGCGGCGCAGCGGCGATGGGAGCGGCAGCAAGAGGCGGCCGGAGGCGGCAAAAGCACCGGCGG
CTCGGGCTGTGCGTGGACACGGCATCACGGCGGTGGTTCAGGGAAATAAAGTGGATGCCGGGGTGGAGCTCGGGACGGCG
AGGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11234.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis