Browse Element(s) Details


Os.13071.1.S1_at

Description gb:AK071525.1
DB_XREF= gi:32981548
TID=Os.13071.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sucrose-6F-phosphate phosphohydrolase (B1111C09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099K18, full insert sequence.
FL= gb:AK071525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2788011/11sucrose-phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27850OsAffx.11234.1.S1_x_at11/111+15883978..15884409hypothetical protein
LOC_Os01g27860NANA1+15889681..15890013hypothetical protein
LOC_Os01g27880Os.13071.1.S1_at11/111+15895754..15900213sucrose-phosphatase, putative, expressed
LOC_Os01g27890Os.47994.1.S1_x_at11/111+15908865..15910491Cytochrome P450 family protein, expressed
LOC_Os01g27900NANA1+15919742..15923259Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0005986biological_processsucrose biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0050307molecular_functionsucrose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13071.1.S1_at--322--7431Chr01:15897288..15897312 (25 bp)
GTGTTATCATTCAACCTTCTGGGCT
LOC_Os01g27880
Os.13071.1.S1_at--429--10611Chr01:15897272..15897296 (25 bp)
TTCTGGGCTTGAATGTTCTCTCCAT
LOC_Os01g27880
Os.13071.1.S1_at--746--2031Chr01:15897176..15897200 (25 bp)
ACTATTTGTCTCACAGTCTGGTTCA
LOC_Os01g27880
Os.13071.1.S1_at--599--6351Chr01:15896203..15896227 (25 bp)
GATGCGCGGTTGTGCTGTTTGACAA
LOC_Os01g27880
Os.13071.1.S1_at--285--751Chr01:15896049..15896190 (25 bp)
ATGTAAAGCCTGAAACCCCTGCTGG
LOC_Os01g27880
Os.13071.1.S1_at--437--9131Chr01:15896030..15896054 (25 bp)
TGCTGGCTTCCTGATAACACATGTA
LOC_Os01g27880
Os.13071.1.S1_at--412--7951Chr01:15895987..15896011 (25 bp)
GGATACTCTTCAGCGGATGAGCAGT
LOC_Os01g27880
Os.13071.1.S1_at--1052--6271Chr01:15895972..15895996 (25 bp)
GATGAGCAGTCCTCCAAGCTTTAAA
LOC_Os01g27880
Os.13071.1.S1_at--837--10511Chr01:15895941..15895965 (25 bp)
TTCACCCCTGTGCACACGGAATGAA
LOC_Os01g27880
Os.13071.1.S1_at--745--5831Chr01:15895895..15895919 (25 bp)
GACCTGCTCGTCTGAGAATCTCATT
LOC_Os01g27880
Os.13071.1.S1_at--275--2291Chr01:15895851..15895875 (25 bp)
AAATGATCTGTCTCGTGACTCGTGC
LOC_Os01g27880
Target Sequence 
GTGTTATCATTCAACCTTCTGGGCTTGAATGTTCTCTCCATGCCTCTGTTGATGCATTGAGTTCATGTTATGGTGAGAAA
CAAGGGAAAAAATACCGAACATGGGTGGACAGACTATTTGTCTCACAGTCTGGTTCAGACAGTTGGCTGGTCAGATTTGA
CTTGTGGGAGGCAGAAGGTGATGCGCGGTTGTGCTGTTTGACAAGTCTTGCGCTGAATGTAAAGCCTGAAACCCCTGCTG
GCTTCCTGATAACACATGTACACAAAACATGGCTCAAAGGATACTCTTCAGCGGATGAGCAGTCCTCCAAGCTTTAAACC
CTTTTTCACCCCTGTGCACACGGAATGAATTTACTTGATGATAAATGAAGGACCTGCTCGTCTGAGAATCTCATTTTCTT
ATTTAATGTAATATAAATGATCTGTCTCGTGACTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis