Browse Element(s) Details


Os.47994.1.S1_x_at

Description gb:NM_193877.1
DB_XREF= gi:34914837
GEN=B1111C09.13
TID=Os.47994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47994 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (B1111C09.13), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2789011/11Cytochrome P450 family protein, expressed
LOC_Os03g396501/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27850OsAffx.11234.1.S1_x_at11/111+15883978..15884409hypothetical protein
LOC_Os01g27860NANA1+15889681..15890013hypothetical protein
LOC_Os01g27880Os.13071.1.S1_at11/111+15895754..15900213sucrose-phosphatase, putative, expressed
LOC_Os01g27890Os.47994.1.S1_x_at11/111+15908865..15910491Cytochrome P450 family protein, expressed
LOC_Os01g27900NANA1+15919742..15923259Transposable element protein, putative, Retrotrans_gag
LOC_Os01g27910Os.40855.2.S1_x_at10/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40855.4.S1_x_at3/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40855.4.S1_at1/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40360.1.S1_x_at1/111+15927124..15929235hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47994.1.S1_x_at--150--3852Chr03:22003943..22004214 (25 bp)
CTGCAGTGGACCATGTCGGAGCTGA
LOC_Os03g39650
Os.47994.1.S1_x_at--122--2611Chr01:15909410..15909434 (25 bp)
AACCCTAGGGTGATGCGCAAGGCGC
LOC_Os01g27890
Os.47994.1.S1_x_at--657--4111Chr01:15909388..15909412 (25 bp)
CGCAGGACGAGGTCCGACGAGCCCT
LOC_Os01g27890
Os.47994.1.S1_x_at--1079--4311Chr01:15909361..15909385 (25 bp)
CCATTGCCGGGCAGGACGGCGTCAC
LOC_Os01g27890
Os.47994.1.S1_x_at--164--7111Chr01:15909341..15909365 (25 bp)
GTCACCGAGGAGAGCCTGCGCGATC
LOC_Os01g27890
Os.47994.1.S1_x_at--617--1751Chr01:15909304..15909328 (25 bp)
ACCTCGTCATCAAGGAGTCGCTCCG
LOC_Os01g27890
Os.47994.1.S1_x_at--757--1391Chr01:15909235..15909259 (25 bp)
AGACGTGCCGGGTGATGGGCTTCGA
LOC_Os01g27890
Os.47994.1.S1_x_at--738--4251Chr01:15909206..15909230 (25 bp)
CCGGAGGGTGTGATGGTGCTCGTCA
LOC_Os01g27890
Os.47994.1.S1_x_at--856--7631Chr01:15909086..15909110 (25 bp)
GGGACGGACTTCGAGTACATACCGT
LOC_Os01g27890
Os.47994.1.S1_x_at--906--4051Chr01:15909075..15909099 (25 bp)
CGAGTACATACCGTTCGGCGCCGGG
LOC_Os01g27890
Os.47994.1.S1_x_at--1119--8351Chr01:15908905..15908929 (25 bp)
GGCGGTGCTCCGACCTCCTGCTTGT
LOC_Os01g27890
Target Sequence 
CTGCAGTGGACCATGTCGGAGCTGATGAGGAACCCTAGGGTGATGCGCAAGGCGCAGGACGAGGTCCGACGAGCCCTCGC
CATTGCCGGGCAGGACGGCGTCACCGAGGAGAGCCTGCGCGATCTCCCCTACCTGCACCTCGTCATCAAGGAGTCGCTCC
GGCTGCACCCGCCGGTGACGATGCTGCTGCCGAGGGAGTGCCGGGAGACGTGCCGGGTGATGGGCTTCGACGTGCCGGAG
GGTGTGATGGTGCTCGTCAACGCGTGGGCGATCGGCAGGGACCCGGCGCACTGGGACTCGCCGGAGGAGTTCGCGCCGGA
GAGGTTCGAGGGCGTCGGCGCCGCCGACTTCAAGGGGACGGACTTCGAGTACATACCGTTCGGCGCCGGGCGGCGTATGT
GCCCCGGGATGGCGTTCGGGCTGGCCAACATGGAGCTCGCGCTCGCCGCCCTCCTGTACCACTTCGACTGGGAGCTGCCC
GGCGGGATGCTTCCCGGCGAGCTGGACATGACGGAGGCGTTGGGGCTCACCACGCGGCGGTGCTCCGACCTCCTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47994.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis