Browse Element(s) Details


Os.40855.4.S1_x_at

Description gb:NM_183851.1
DB_XREF= gi:34894829
GEN=P0554D10.18
TID=Os.40855.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1111C09.16 (B1111C09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0554D10.18 (P0554D10.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g050207/11expressed protein
LOC_Os04g023407/11hypothetical protein
LOC_Os01g198946/11transposon protein, putative, Mutator sub-class
LOC_Os12g198406/11hypothetical protein
LOC_Os09g239806/11hypothetical protein
LOC_Os08g363406/11K+ potassium transporter family protein, expressed
LOC_Os04g260306/11hypothetical protein
LOC_Os12g273105/11Transferase family protein
LOC_Os05g300805/11hypothetical protein
LOC_Os06g293304/11hypothetical protein
LOC_Os02g587704/11retrotransposon protein, putative, unclassified
LOC_Os04g065604/11hypothetical protein
LOC_Os04g188204/11hypothetical protein
LOC_Os06g214204/11hypothetical protein
LOC_Os11g472504/11hypothetical protein
LOC_Os05g207604/11hypothetical protein
LOC_Os04g134004/11hypothetical protein
LOC_Os02g378904/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os12g331704/11hypothetical protein
LOC_Os12g198304/11hypothetical protein
LOC_Os06g484904/11hypothetical protein
LOC_Os01g468904/11hypothetical protein
LOC_Os04g560204/11hypothetical protein
LOC_Os02g388304/11hypothetical protein
LOC_Os08g217104/11hypothetical protein
LOC_Os01g212903/11hypothetical protein
LOC_Os09g117103/11hypothetical protein
LOC_Os05g456003/11hypothetical protein
LOC_Os08g039803/11Insect antifreeze protein
LOC_Os05g308303/11hypothetical protein
LOC_Os09g018003/11hypothetical protein
LOC_Os01g279103/11hypothetical protein
LOC_Os08g142803/11hypothetical protein
LOC_Os07g115003/11hypothetical protein
LOC_Os11g431303/11hypothetical protein
LOC_Os10g111603/11hypothetical protein
LOC_Os04g287003/11hypothetical protein
LOC_Os04g261403/11hypothetical protein
LOC_Os01g147303/11hypothetical protein
LOC_Os06g369803/11hypothetical protein
LOC_Os01g377203/11hypothetical protein
LOC_Os04g056203/11hypothetical protein
LOC_Os04g188402/11hypothetical protein
LOC_Os06g167002/11hypothetical protein
LOC_Os08g327302/11hypothetical protein
LOC_Os04g250702/11hypothetical protein
LOC_Os05g090102/11hypothetical protein
LOC_Os06g214302/11hypothetical protein
LOC_Os07g247702/11hypothetical protein
LOC_Os08g131202/11hypothetical protein
LOC_Os08g419202/11hypothetical protein
LOC_Os12g201692/11hypothetical protein
LOC_Os04g197101/11hypothetical protein
LOC_Os05g341901/11hypothetical protein
LOC_Os12g346701/11Zinc knuckle family protein
LOC_Os04g209001/11hypothetical protein
LOC_Os05g337201/11hypothetical protein
LOC_Os03g361501/11hypothetical protein
LOC_Os08g052601/11hypothetical protein
LOC_Os10g109501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g043391/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04980OsAffx.8980.1.S1_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04980Os.27639.1.S1_x_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04990OsAffx.24103.1.S1_at11/112+2367921..2368406hypothetical protein
LOC_Os02g05000Os.52587.1.S1_at11/112+2369614..2371346expressed protein
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008152biological_processmetabolism
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016740molecular_functiontransferase activity
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40855.4.S1_x_at--234--453117Chr12:17121831..17122030 (25 bp)
GCCGCCGACTGGCATCAGTATCTTC
NONE
Os.40855.4.S1_x_at--1006--119125Chr12:17122022..17122046 (25 bp)
AGTATCTTCAACACAAGCTGCCTAC
NONE
Os.40855.4.S1_x_at--520--269140Chr12:17122036..17122060 (25 bp)
AAGCTGCCTACGTTTGCCATGGCTG
NONE
Os.40855.4.S1_x_at--867--88181Chr12:17122103..17122127 (25 bp)
TGTTGATTGGCCTTACCATCTTCAT
NONE
Os.40855.4.S1_x_at--854--91718Chr12:7856090..7856539 (25 bp)
TGCCTTCGCCTCTACATTTGGTTTA
NONE
Os.40855.4.S1_x_at--625--2125Chr12:27200927..27200948 (22 bp)
ATTTGGTTTAGACAGCTACCACTAC
NONE
Os.40855.4.S1_x_at--999--961145Chr12:6333466..6333490 (25 bp)
TCATGGTGGAGCGACTTCATCTTTA
NONE
Os.40855.4.S1_x_at--822--205207Chr12:670017..670037 (21 bp)
ACTTCATCTTTATTATCTTCGCAAA
NONE
Os.40855.4.S1_x_at--1103--363153Chr12:17122383..17122403 (21 bp)
CTTCGCAAACTCTATTGCTGCTACT
NONE
Os.40855.4.S1_x_at--595--2799Chr07:25809595..25809619 (25 bp)
AAGAGGCTCTCCAACATTCATGATT
NONE
Os.40855.4.S1_x_at--435--1057158Chr12:4429047..4429071 (25 bp)
TTCTACTTGGACATCTTCAACACAT
NONE
Target Sequence 
GCCGCCGACTGGCATCAGTATCTTCAACACAAGCTGCCTACGTTTGCCATGGCTGCCGACTGGTTCCTTCACTTCCATGG
CTGCATGATTCTGCCAGTGTTGATTGGCCTTACCATCTTCATCGCCGGTCGTCTCTGCCTTCGCCTCTACATTTGGTTTA
GACAGCTACCACTACTGATGGACATCATCGTCTTCCGCCGCCGACTCGTGTTATGCCGCCGCCGACTGGTGCTTTTATCT
TCACAACTGCGCGTCTTCACTACCGGTTTGCTTCTGTTGCCGCCGACTCGTGTTCACTTCATCACGGCAACACAACTTTG
TCATCATGGTGGAGCGACTTCATCTTTATTATCTTCGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCA
ACCACGACGTCTTTGTGAGCTTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGAGGCTCTCCAACATT
CATGATTTCTACTTGGACATCTTCAACACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40855.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis