Browse Element(s) Details


OsAffx.2511.1.S1_at

Description tigr:9630.m00423
TID=OsAffx.2511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin responsive protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0506011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed
LOC_Os02g05070OsAffx.24105.1.S1_x_at11/112+2412243..2413337expressed protein
LOC_Os02g05080OsAffx.24102.1.S1_x_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24102.2.S1_s_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24107.1.A1_at2/112+2415272..2417243hypothetical protein
LOC_Os02g05090NANA2+2431134..2431901hypothetical protein
LOC_Os02g05100OsAffx.29313.1.S1_at1/112+2433691..2435973transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2511.1.S1_at--500--211Chr02:2409075..2409099 (25 bp)
ATTTGAGCAGCTACTCAGGAAGGCA
LOC_Os02g05060
OsAffx.2511.1.S1_at--949--7631Chr02:2409024..2409048 (25 bp)
GGGAGCTCTGAGGATTCCATGTGAT
LOC_Os02g05060
OsAffx.2511.1.S1_at--595--3411Chr02:2408947..2408971 (25 bp)
CAGCAATGTGCTACTCTTCTTCAGA
LOC_Os02g05060
OsAffx.2511.1.S1_at--260--9571Chr02:2408933..2408957 (25 bp)
TCTTCTTCAGAGCATGAGATCTTGT
LOC_Os02g05060
OsAffx.2511.1.S1_at--253--6252Chr11:3584324..3584433 (24 bp)
GATGGTATTTCTTAGTTTCTCCCCT
NONE
OsAffx.2511.1.S1_at--90--9511Chr02:2408885..2408909 (25 bp)
TCTCCCCTTTGCACTCAATTGTTAT
LOC_Os02g05060
OsAffx.2511.1.S1_at--1110--6791Chr02:2408865..2408889 (25 bp)
GTTATTGCACTTTGTTGCTGTTGTT
LOC_Os02g05060
OsAffx.2511.1.S1_at--995--1331Chr02:2408804..2408828 (25 bp)
AGAGTTTGGAGTTGCTGAGCTTTGC
LOC_Os02g05060
OsAffx.2511.1.S1_at--740--4751Chr02:2408791..2408815 (25 bp)
GCTGAGCTTTGCTACTTTGTTCAAG
LOC_Os02g05060
OsAffx.2511.1.S1_at--950--8811Chr02:2408674..2408698 (25 bp)
TGTTGATAATTCTTTACCCGCTTGT
LOC_Os02g05060
OsAffx.2511.1.S1_at--239--1811Chr02:2408659..2408683 (25 bp)
ACCCGCTTGTTCGATGTTATTCACT
LOC_Os02g05060
Target Sequence 
ATTTGAGCAGCTACTCAGGAAGGCAGAGGAGGAGTTTGGGTTCCAGCATGAGGGAGCTCTGAGGATTCCATGTGATGTTG
AGGTGTTTGAGGGTATCTTGAGGCTGGTTGGCAGGAAGGATGAGAAGGCAGCAATGTGCTACTCTTCTTCAGAGCATGAG
ATCTTGTGCAGATGATGGTATTTCTTAGTTTCTCCCCTTTGCACTCAATTGTTATTGCACTTTGTTGCTGTTGTTTTCTT
GGTTCTTGGTCTTCTGAAGAGAAGAGGAGGAAGAGTTTGGAGTTGCTGAGCTTTGCTACTTTGTTCAAGAGGATGAGGTT
ATGAATTCACATTCTTTTTAGAGGAAAAAAAATCAAGGATTCACATTATCTAAAAAAAGTATCTTAGGTAAACTTATTCT
TTGTTGATAATTCTTTACCCGCTTGTTCGATGTTATTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis