Browse Element(s) Details


Os.49155.1.S1_at

Description gb:AK063330.1
DB_XREF= gi:32973348
TID=Os.49155.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A01, full insert sequence.
FL= gb:AK063330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0503011/11sucrose phosphate phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04990OsAffx.24103.1.S1_at11/112+2367921..2368406hypothetical protein
LOC_Os02g05000Os.52587.1.S1_at11/112+2369614..2371346expressed protein
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed
LOC_Os02g05070OsAffx.24105.1.S1_x_at11/112+2412243..2413337expressed protein
LOC_Os02g05080OsAffx.24102.1.S1_x_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24102.2.S1_s_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24107.1.A1_at2/112+2415272..2417243hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005986biological_processsucrose biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0050307molecular_functionsucrose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49155.1.S1_at--51--8051Chr02:2391951..2391975 (25 bp)
GGAGTTATTATTCATCCTGCTGGGC
LOC_Os02g05030
Os.49155.1.S1_at--156--571Chr02:2391964..2391988 (25 bp)
ATCCTGCTGGGCTTGAGTGTTCTCT
LOC_Os02g05030
Os.49155.1.S1_at--4--6131Chr02:2391978..2392002 (25 bp)
GAGTGTTCTCTTCATGCATCAATTG
LOC_Os02g05030
Os.49155.1.S1_at--830--5731Chr02:2392063..2392087 (25 bp)
GACTGGTTGTCTCACAATGTGGTTC
LOC_Os02g05030
Os.49155.1.S1_at--136--6271Chr02:2393780..2393804 (25 bp)
GATGTGTGGTCGTGTTGTCTGACAA
LOC_Os02g05030
Os.49155.1.S1_at--98--7151Chr02:2393805..2393986 (25 bp)
GTCTTGCACTGAATGCGAAGCCTGA
LOC_Os02g05030
Os.49155.1.S1_at--962--1071Chr02:2393995..2394019 (25 bp)
AGGGCTTCGTGGTAACACACATCCA
LOC_Os02g05030
Os.49155.1.S1_at--653--7991Chr02:2394050..2394074 (25 bp)
GGATGAGCAATCGTCCAAGCTTTAG
LOC_Os02g05030
Os.49155.1.S1_at--985--1531Chr02:2394067..2394091 (25 bp)
AGCTTTAGAACCTTTTCTGCACCTC
LOC_Os02g05030
Os.49155.1.S1_at--846--10471Chr02:2394147..2394171 (25 bp)
TTACTTCCTTTTCTTGTCTATATTG
LOC_Os02g05030
Os.49155.1.S1_at--357--8531Chr02:2394196..2394220 (25 bp)
TGGAGGATTCCCAGAGCCCCAAATT
LOC_Os02g05030
Target Sequence 
GGAGTTATTATTCATCCTGCTGGGCTTGAGTGTTCTCTTCATGCATCAATTGATGCATTGGGGTCATGTTACGGTGACAA
ACAAGGGAAGAAATACAGAGCATGGGTGGACAGACTGGTTGTCTCACAATGTGGTTCAGAGGGTTGGCTGGTGAGATTTA
ACTTGTGGGAGTTGGAAGGTGATGTGTGGTCGTGTTGTCTGACAAGTCTTGCACTGAATGCGAAGCCTGAAACCCCCGAG
GGCTTCGTGGTAACACACATCCACAAAACATGGCTCAAAGGGTACTCATCAGCGGATGAGCAATCGTCCAAGCTTTAGAA
CCTTTTCTGCACCTCCGTGTGCACANGGAAGGAATTTACTCGAGGATAAATAATGAATCTTCTCTTGAGATTACTTCCTT
TTCTTGTCTATATTGTCAATTTTGTTCAAAATACTATGCTGGAGGATTCCCAGAGCCCCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis