Browse Element(s) Details


OsAffx.24102.1.S1_x_at

Description tigr:9630.m00426
TID=OsAffx.24102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0508011/11hypothetical protein
LOC_Os02g049005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed
LOC_Os02g05070OsAffx.24105.1.S1_x_at11/112+2412243..2413337expressed protein
LOC_Os02g05080OsAffx.24102.1.S1_x_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24102.2.S1_s_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24107.1.A1_at2/112+2415272..2417243hypothetical protein
LOC_Os02g05090NANA2+2431134..2431901hypothetical protein
LOC_Os02g05100OsAffx.29313.1.S1_at1/112+2433691..2435973transposon protein, putative, Mutator sub-class
LOC_Os02g05110Os.14919.1.S1_at2/112+2439556..2442914hypothetical protein
LOC_Os02g05110Os.56216.1.S1_at1/112+2439556..2442914hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24102.1.S1_x_at--167--4131Chr02:2416686..2416710 (25 bp)
CGCATCCTGCTGTCGTCGAGGAGGC
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--625--4411Chr02:2416740..2416764 (25 bp)
GCCACCTGGAGCAAGGACGGCGACT
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--430--1051Chr02:2416999..2417023 (25 bp)
AGGTGTACTCGTCGCACGTCGTGCA
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--892--7331Chr02:2417019..2417043 (25 bp)
GTGCACATCGGCGACAGCAAGCTGT
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--771--8692Chr02:2417041..2417065 (25 bp)
TGTGCGTCGCCAAGCTGTACACGGT
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--292--2692Chr02:2417052..2417076 (25 bp)
AAGCTGTACACGGTCTCTCGCCGGG
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--56--8112Chr02:2417077..2417101 (25 bp)
GGACCTGCACCGAATACTGCTGCGA
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--166--1992Chr02:2417092..2417116 (25 bp)
ACTGCTGCGATTTCGAGTCGGATGA
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--172--8972Chr02:2417114..2417138 (25 bp)
TGAAAGGAATTTCGCCGTGCTCACC
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--895--5911Chr02:2417169..2417193 (25 bp)
GAGCTTCGCATCATCACGCATAAGT
LOC_Os02g05080
OsAffx.24102.1.S1_x_at--1059--371Chr02:2417181..2417205 (25 bp)
ATCACGCATAAGTCGCAACGTTATA
LOC_Os02g05080
Target Sequence 
CGCATCCTGCTGTCGTCGAGGAGGCACGGCACCTACTCCTTCGACACGGCGCGCGCCACCTGGAGCAAGGACGGCGACTG
GACGCTGCCCTTCAGCGACCGCGCCGAGTACGTCCCCGAGCATGGCCTCTGCTTCGGCTTCTCCGCCGCGGACGACGACG
TCCTCGGCGCGTGGGACCTGTTCTCCTCCTCCACCGTCCAGCAGCCGGAGCCGCCACCGCCGGCGCACCCCGGGTGCAGG
GACTTCGCCGTGCCGGGGCCGTCGCGTCGCAGGGCGCGCCCGTCGCACGCCGTCGACCTCGGCGAATACACCGAGGTGTA
CTCGTCGCACGTCGTGCACATCGGCGACAGCAAGCTGTGCGTCGCCAAGCTGTACACGGTCTCTCGCCGGGGGACCTGCA
CCGAATACTGCTGCGATTTCGAGTCGGATGAAAGGAATTTCGCCGTGCTCACCGGCGTCGAGGTGGTGCGCGGCCACGAC
GACGAGCTTCGCATCATCACGCATAAGTCGCAACGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis