Browse Element(s) Details


OsAffx.29313.1.S1_at

Description tigr:9636.m02263
TID=OsAffx.29313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2327011/11hypothetical protein
LOC_Os01g211902/11SWIM zinc finger family protein
LOC_Os08g334501/11hypothetical protein
LOC_Os11g328501/11SWIM zinc finger family protein
LOC_Os11g248101/11Transposable element protein, putative, MuDR
LOC_Os03g621901/11transposon protein, putative, Mutator sub-class
LOC_Os02g275201/11transposon protein, putative, Mutator sub-class
LOC_Os06g148401/11transposon protein, putative, Mutator sub-class
LOC_Os01g578301/11hypothetical protein
LOC_Os03g326501/11transposon protein, putative, Mutator sub-class
LOC_Os05g301701/11hypothetical protein
LOC_Os01g533201/11transposon protein, putative, Mutator sub-class
LOC_Os01g451741/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g221901/11SWIM zinc finger family protein
LOC_Os09g165301/11Transposable element protein, putative, MuDR
LOC_Os12g300501/11transposon protein, putative, Mutator sub-class
LOC_Os10g181401/11transposon protein, putative, Mutator sub-class
LOC_Os05g333701/11transposon protein, putative, Mutator sub-class
LOC_Os11g324201/11transposon protein, putative, Mutator sub-class
LOC_Os12g194601/11transposon protein, putative, Mutator sub-class
LOC_Os12g418701/11transposon protein, putative, Mutator sub-class
LOC_Os08g264301/11transposon protein, putative, Mutator sub-class
LOC_Os01g679901/11Transposable element protein, putative, MuDR
LOC_Os01g627101/11Transposable element protein, putative, MuDR
LOC_Os07g047701/11transposon protein, putative, Mutator sub-class
LOC_Os01g281401/11transposon protein, putative, Mutator sub-class
LOC_Os02g160501/11transposon protein, putative, Mutator sub-class
LOC_Os02g362301/11transposon protein, putative, Mutator sub-class
LOC_Os05g281201/11transposon protein, putative, Mutator sub-class
LOC_Os12g060401/11transposon protein, putative, Mutator sub-class
LOC_Os05g415601/11transposon protein, putative, Mutator sub-class
LOC_Os05g260101/11transposon protein, putative, Mutator sub-class
LOC_Os02g399001/11transposon protein, putative, Mutator sub-class
LOC_Os04g530101/11Transposable element protein, putative, MuDR
LOC_Os01g562501/11hypothetical protein
LOC_Os06g216101/11transposon protein, putative, Mutator sub-class
LOC_Os04g296001/11transposon protein, putative, Mutator sub-class
LOC_Os02g026101/11transposon protein, putative, Mutator sub-class
LOC_Os03g224801/11transposon protein, putative, Mutator sub-class
LOC_Os11g126601/11transposon protein, putative, Mutator sub-class
LOC_Os02g563901/11transposon protein, putative, Mutator sub-class
LOC_Os06g495401/11transposon protein, putative, Mutator sub-class
LOC_Os11g145101/11transposon protein, putative, Mutator sub-class
LOC_Os07g369701/11hypothetical protein
LOC_Os08g421201/11transposon protein, putative, Mutator sub-class
LOC_Os12g048901/11hypothetical protein
LOC_Os11g052201/11transposon protein, putative, Mutator sub-class
LOC_Os06g115701/11SWIM zinc finger family protein
LOC_Os09g198601/11transposon protein, putative, Mutator sub-class
LOC_Os05g406001/11Transposable element protein, putative, MuDR
LOC_Os09g099901/11transposon protein, putative, Mutator sub-class
LOC_Os10g272401/11transposon protein, putative, Mutator sub-class
LOC_Os05g460101/11hypothetical protein
LOC_Os09g118201/11SWIM zinc finger family protein
LOC_Os11g063801/11transposon protein, putative, Mutator sub-class
LOC_Os03g299001/11transposon protein, putative, Mutator sub-class
LOC_Os07g051401/11transposon protein, putative, Mutator sub-class
LOC_Os02g142801/11transposon protein, putative, Mutator sub-class
LOC_Os06g379701/11Transposable element protein, putative, MuDR
LOC_Os04g299401/11transposon protein, putative, Mutator sub-class
LOC_Os09g258701/11transposon protein, putative, Mutator sub-class
LOC_Os03g465901/11transposon protein, putative, Mutator sub-class
LOC_Os10g231901/11transposon protein, putative, Mutator sub-class
LOC_Os04g177401/11hypothetical protein
LOC_Os06g232301/11transposon protein, putative, Mutator sub-class
LOC_Os11g301701/11transposon protein, putative, Mutator sub-class
LOC_Os02g549501/11hypothetical protein
LOC_Os02g051001/11transposon protein, putative, Mutator sub-class
LOC_Os11g303901/11transposon protein, putative, Mutator sub-class
LOC_Os07g442401/11transposon protein, putative, Mutator sub-class
LOC_Os02g049101/11transposon protein, putative, Mutator sub-class
LOC_Os04g435001/11SWIM zinc finger family protein
LOC_Os02g383601/11Transposable element protein, putative, MuDR
LOC_Os06g424001/11transposon protein, putative, Mutator sub-class
LOC_Os06g227101/11transposon protein, putative, Mutator sub-class
LOC_Os08g164401/11transposon protein, putative, Mutator sub-class
LOC_Os02g277501/11transposon protein, putative, Mutator sub-class
LOC_Os01g408901/11transposon protein, putative, Mutator sub-class
LOC_Os01g063001/11transposon protein, putative, Mutator sub-class
LOC_Os05g420301/11hypothetical protein
LOC_Os11g462901/11transposon protein, putative, Mutator sub-class
LOC_Os04g273101/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23220NANA8+13886951..13887582hypothetical protein
LOC_Os08g23230OsAffx.828.1.S1_x_at1/118+13893507..13894100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23240OsAffx.22927.2.S1_x_at1/118+13897982..13900529retrotransposon protein, putative, unclassified
LOC_Os08g23250OsAffx.21171.4.S1_at2/118+13903147..13905158retrotransposon protein, putative, unclassified
LOC_Os08g23260NANA8+13906199..13908083retrotransposon protein, putative, unclassified
LOC_Os08g23270OsAffx.29313.1.S1_at11/118+13911249..13912835hypothetical protein
LOC_Os08g23280Os.50210.1.S1_at11/118+13915390..13918510expressed protein
LOC_Os08g23290OsAffx.17113.1.S1_at11/118+13923227..13925568Leucine Rich Repeat family protein
LOC_Os08g23300NANA8+13932644..13935880transposon protein, putative, unclassified
LOC_Os08g23310NANA8+13936497..13942649transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29313.1.S1_at--617--5452Chr08:13912749..13912773 (25 bp)
GAACGATATTAATCCAGCGGAATGG
LOC_Os08g23270
OsAffx.29313.1.S1_at--243--62586Chr12:17966403..17966433 (25 bp)
GATGGGAGTACAATGAGGTTATTCA
LOC_Os12g30050
OsAffx.29313.1.S1_at--721--5411Chr08:13912649..13912673 (25 bp)
GAAGCGATTTATGCTAATGGAGAAT
LOC_Os08g23270
OsAffx.29313.1.S1_at--887--1571Chr08:13912565..13912589 (25 bp)
AGCTCAACTGGTTACAATATGAAGT
LOC_Os08g23270
OsAffx.29313.1.S1_at--1120--5332Chr08:13912321..13912569 (25 bp)
GAAGTTAGAGACATTCAAGTATACT
LOC_Os08g23270
OsAffx.29313.1.S1_at--110--1691Chr08:13912228..13912252 (25 bp)
AGCCTCGCATGACAATTTGCCTTGT
LOC_Os08g23270
OsAffx.29313.1.S1_at--155--3131Chr08:13912215..13912239 (25 bp)
AATTTGCCTTGTCTTCTTGGCACGT
LOC_Os08g23270
OsAffx.29313.1.S1_at--665--9631Chr08:13912186..13912210 (25 bp)
TCAGGGTCCACCAACCATGAACCAT
LOC_Os08g23270
OsAffx.29313.1.S1_at--983--3511Chr08:13912171..13912195 (25 bp)
CATGAACCATGCCAGGACATCGTCG
LOC_Os08g23270
OsAffx.29313.1.S1_at--21--6691Chr08:13912133..13912157 (25 bp)
GTTCCGCTTTGCACTTCGACATTAG
LOC_Os08g23270
OsAffx.29313.1.S1_at--257--291Chr08:13912086..13912110 (25 bp)
ATAGAGGACGTCATCGGTCCCTCAT
LOC_Os08g23270
Target Sequence 
GAACGATATTAATCCAGCGGAATGGGCTACTGAGGATTTTTCTGGTCTGGTCGTCTCTGAAGAGGATAGTGTGAGATGGG
AGTACAATGAGGTTATTCAAGAAGCGATTTATGCTAATGGAGAATATATGAAGGAGGCGGCAAAGTATTTTGCAGTGTCA
CTTCATAGAGAGTTTTGGTTGCCAAGCTCAACTGGTTACAATATGAAGTTAGAGACATTCAAGTATACTATTAGCTATGC
CAAGGCGTGGAGGGCCAAACAGAAAAAAATAATAGAGATGAGATTTGGAACTTACGAAGCCTCGCATGACAATTTGCCTT
GTCTTCTTGGCACGTCGAGTCAGGGTCCACCAACCATGAACCATGCCAGGACATCGTCGGAGTACGGGTGGGGTTCCGCT
TTGCACTTCGACATTAGCGACTTTGACTTCCAGCACTCGATAGAGGACGTCATCGGTCCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis