Browse Element(s) Details


OsAffx.17113.1.S1_at

Description tigr:9636.m02265
TID=OsAffx.17113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2329011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23240OsAffx.22927.2.S1_x_at1/118+13897982..13900529retrotransposon protein, putative, unclassified
LOC_Os08g23250OsAffx.21171.4.S1_at2/118+13903147..13905158retrotransposon protein, putative, unclassified
LOC_Os08g23260NANA8+13906199..13908083retrotransposon protein, putative, unclassified
LOC_Os08g23270OsAffx.29313.1.S1_at11/118+13911249..13912835hypothetical protein
LOC_Os08g23280Os.50210.1.S1_at11/118+13915390..13918510expressed protein
LOC_Os08g23290OsAffx.17113.1.S1_at11/118+13923227..13925568Leucine Rich Repeat family protein
LOC_Os08g23300NANA8+13932644..13935880transposon protein, putative, unclassified
LOC_Os08g23310NANA8+13936497..13942649transposon protein, putative, unclassified
LOC_Os08g23320Os.50001.1.S1_at11/118+13946091..139496224-hydroxybenzoate polyprenyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005739cellular_componentmitochondrion
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17113.1.S1_at--826--1431Chr08:13925021..13925045 (25 bp)
AGAACTTCAGTTTGCTCCTTCTTGA
LOC_Os08g23290
OsAffx.17113.1.S1_at--732--8871Chr08:13925043..13925067 (25 bp)
TGATGGAAACCGACTCTCTGGACAC
LOC_Os08g23290
OsAffx.17113.1.S1_at--909--1151Chr08:13925188..13925212 (25 bp)
AGTAATAACTTCTCTGGTGCACTCC
LOC_Os08g23290
OsAffx.17113.1.S1_at--56--351Chr08:13925259..13925283 (25 bp)
ATACAATCCGCTTCTCTCAGGGAAT
LOC_Os08g23290
OsAffx.17113.1.S1_at--742--2991Chr08:13925281..13925305 (25 bp)
AATGTTCCAAGCAGTGGGCAGCTCT
LOC_Os08g23290
OsAffx.17113.1.S1_at--312--7651Chr08:13925331..13925355 (25 bp)
GGGAGATCCACTGTTGTCTTTGAAT
LOC_Os08g23290
OsAffx.17113.1.S1_at--786--6691Chr08:13925366..13925390 (25 bp)
GTTCCAGTTCTGATTCTAGTCCAAG
LOC_Os08g23290
OsAffx.17113.1.S1_at--605--1071Chr08:13925389..13925413 (25 bp)
AGGGAGTTCTCATCATCTGACACAG
LOC_Os08g23290
OsAffx.17113.1.S1_at--345--8611Chr08:13925441..13925465 (25 bp)
TGGTGACAACAATTGCATTCCTTGC
LOC_Os08g23290
OsAffx.17113.1.S1_at--513--91Chr08:13925457..13925481 (25 bp)
ATTCCTTGCATTCTTTTCAGTCACA
LOC_Os08g23290
OsAffx.17113.1.S1_at--204--9651Chr08:13925473..13925497 (25 bp)
TCAGTCACATTGCTTACCAGAGAAT
LOC_Os08g23290
Target Sequence 
AGAACTTCAGTTTGCTCCTTCTTGATGGAAACCGACTCTCTGGACACCTACCAGCAGAGATTGGTCATCTTCAACTTGTT
GCTTTGAATATCTCAAGCAATTTTATTTCTGGTGAAATTCCCTCTGAGATTGGTCATATGGTAACACTTGAAAGCCTTGA
TCTGTCAAGTAATAACTTCTCTGGTGCACTCCCATCAAACCTTAACCAACTCACTAAACTGAGTAGGTTCAATTTGTCAT
ACAATCCGCTTCTCTCAGGGAATGTTCCAAGCAGTGGGCAGCTCTCCACCTTTGATGAGCAATCTTTTCTGGGAGATCCA
CTGTTGTCTTTGAATGTAACAGCAGGTTCCAGTTCTGATTCTAGTCCAAGGGAGTTCTCATCATCTGACACAGAGGAGCA
TCCTACAAACGAAGAGATCATGGTGACAACAATTGCATTCCTTGCATTCTTTTCAGTCACATTGCTTACCAGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis