Browse Element(s) Details


Os.50001.1.S1_at

Description gb:AK069839.1
DB_XREF= gi:32979863
TID=Os.50001.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031A12, full insert sequence.
FL= gb:AK069839.1 gb:AK119582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2332011/114-hydroxybenzoate polyprenyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23290OsAffx.17113.1.S1_at11/118+13923227..13925568Leucine Rich Repeat family protein
LOC_Os08g23300NANA8+13932644..13935880transposon protein, putative, unclassified
LOC_Os08g23310NANA8+13936497..13942649transposon protein, putative, unclassified
LOC_Os08g23320Os.50001.1.S1_at11/118+13946091..139496224-hydroxybenzoate polyprenyl transferase family protein, expressed
LOC_Os08g23330OsAffx.32056.1.S1_x_at11/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23330OsAffx.32056.1.S1_at11/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23330OsAffx.30536.1.S1_x_at1/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.3.S1_s_at11/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.1.S1_s_at11/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.4.S1_s_at8/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23350NANA8+13967475..13967855hypothetical protein
LOC_Os08g23360Os.52031.1.S1_at11/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os08g23360Os.8747.3.S1_x_at1/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50001.1.S1_at--387--4571Chr08:13946961..13946985 (25 bp)
GCGCGCTAGTTCCAATTTCATATCA
LOC_Os08g23320
Os.50001.1.S1_at--595--9051Chr08:13946936..13946960 (25 bp)
TGCAGTGCAGTCTCATTTCTATTTT
LOC_Os08g23320
Os.50001.1.S1_at--846--6311Chr08:13946906..13946930 (25 bp)
GATGAAAGCCCTTATCCATGTTGAG
LOC_Os08g23320
Os.50001.1.S1_at--167--9231Chr08:13946892..13946916 (25 bp)
TCCATGTTGAGGACTGCTATGCCCT
LOC_Os08g23320
Os.50001.1.S1_at--712--4871Chr08:13946877..13946901 (25 bp)
GCTATGCCCTGCTTTATGCATCAAG
LOC_Os08g23320
Os.50001.1.S1_at--504--3671Chr08:13946521..13946779 (25 bp)
CTTTTGTTATTTCCTGAGCACTTTG
LOC_Os08g23320
Os.50001.1.S1_at--432--8691Chr08:13946498..13946522 (25 bp)
TGTGACAATGTTCCCCATCTTCTGT
LOC_Os08g23320
Os.50001.1.S1_at--82--6791Chr08:13946238..13946262 (25 bp)
GTTACCACGATCTTGTTACCATGTT
LOC_Os08g23320
Os.50001.1.S1_at--578--6771Chr08:13946224..13946248 (25 bp)
GTTACCATGTTCGATGTGTCCCTTG
LOC_Os08g23320
Os.50001.1.S1_at--1051--7451Chr08:13946209..13946233 (25 bp)
GTGTCCCTTGCAGTCTTGTAGAGTT
LOC_Os08g23320
Os.50001.1.S1_at--273--6731Chr08:13946187..13946211 (25 bp)
GTTCTCTTGCACATTCTCTGTTTGA
LOC_Os08g23320
Target Sequence 
GCGCGCTAGTTCCAATTTCATATCATGCAGTGCAGTCTCATTTCTATTTTTATTGGATGAAAGCCCTTATCCATGTTGAG
GACTGCTATGCCCTGCTTTATGCATCAAGTTGCAGAATGAACTTTTGTTATTTCCTGAGCACTTTGTGACAATGTTCCCC
ATCTTCTGTTCAAAAGATAAACCAGGGAACATGATAAAATATTGATGCAGATTGTTGTGCATTTACAAGACTCTTCTGAA
TTCTGATGCTCCTTATTCATGACAAGGCTAATTAATTCAGTCTAACACCAAACATATTTTTACGGGACTAAGATGTAAAT
TGTGCCATACATTTTTTTCCCATGGATAGCAGTTGGACAGAACTATCATAATGTATTTACCGGTTATACCGATTAGTTCA
TTTTGTTACCACGATCTTGTTACCATGTTCGATGTGTCCCTTGCAGTCTTGTAGAGTTCTCTTGCACATTCTCTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis