Browse Element(s) Details


OsAffx.10637.4.S1_s_at

Description gb:NM_196434.1
DB_XREF= gi:37534227
TID=OsAffx.10637.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0040H08.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0414011/11hypothetical protein
LOC_Os04g1612011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g0818011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0880411/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2677011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g1333010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g033309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g059209/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g182209/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g089308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g029608/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g091708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g172408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g261208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g079708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g461008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g281408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g093408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g055708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g168708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g233408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g297208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g069708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g352108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g283108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g292907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g161107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g259607/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g352707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g351407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g371907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g094807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g272306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g194505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g276605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g316005/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g216003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g295902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g171402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g431702/11hypothetical protein
LOC_Os01g241301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g358301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g554701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04130OsAffx.13657.1.S1_at11/114+1892575..1894299hypothetical protein
LOC_Os04g04140OsAffx.10637.3.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.4.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.1.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04150NANA4+1905562..1912230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.46314.2.S1_x_at5/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.45173.5.S1_x_at4/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.45173.1.S1_x_at3/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160OsAffx.20691.1.A1_x_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.47114.1.S1_x_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160OsAffx.20877.1.S1_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04170OsAffx.10637.2.S1_at1/114+1927245..1929023transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10637.4.S1_s_at--956--35330Chr12:22775654..22775678 (25 bp)
CATCCCAGAAGAAGTTATCCGTCAG
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--648--28133Chr12:22775665..22775689 (25 bp)
AAGTTATCCGTCAGGACTGGCTGGC
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--1123--67731Chr12:15198248..15198272 (25 bp)
GTTATCCGTCAGGACTGGCTGGCCG
LOC_Os12g26120
OsAffx.10637.4.S1_s_at--103--2310Chr12:9197733..9197757 (25 bp)
ATATTGCACAACGATTCAACGACAC
LOC_Os12g16110
OsAffx.10637.4.S1_s_at--805--90110Chr12:9197737..9197761 (25 bp)
TGCACAACGATTCAACGACACTACT
LOC_Os12g16110
OsAffx.10637.4.S1_s_at--954--25914Chr12:9197750..9197774 (25 bp)
AACGACACTACTATCTTGAACGTGG
LOC_Os12g16110
OsAffx.10637.4.S1_s_at--1042--20139Chr12:22776005..22776029 (25 bp)
ACTACTATCTTGAACGTGGCCGCTG
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--885--101338Chr12:22776010..22776034 (25 bp)
TATCTTGAACGTGGCCGCTGACCTC
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--186--7739Chr12:22776054..22776078 (25 bp)
ATGTCTGCAACGCAAGAGGTCTCTT
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--732--13339Chr12:22776068..22776092 (25 bp)
AGAGGTCTCTTCTACGACAACCAGA
LOC_Os12g37190
OsAffx.10637.4.S1_s_at--425--338Chr12:22776102..22776126 (25 bp)
CAATGGACGACAAATTTAAACCTCT
LOC_Os12g37190
Target Sequence 
CATCCCAGAAGAAGTTATCCGTCAGGACTGGCTGGCCGTGCTACAAACAACCACCAGGAACCAACTTGTGTGGTTATTAC
GTGTGCGAGATGCTCAGAGTAAATGGGAGGTACAAAACAACCAGTAACCAAATCCCCGAAATCCCATATATTGCACAACG
ATTCAACGACACTACTATCTTGAACGTGGCCGCTGACCTCTGCCAATTCATCCGTCGCGATGTCTGCAACGCAAGAGGTC
TCTTCTACGACAACCAGAGTGAACTCGCAATGGACGACAAATTTAAACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10637.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis