Browse Element(s) Details


OsAffx.13657.1.S1_at

Description tigr:9632.m00321
TID=OsAffx.13657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0413011/11hypothetical protein
LOC_Os02g547401/11retrotransposon protein, putative, unclassified
LOC_Os05g251401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04130OsAffx.13657.1.S1_at11/114+1892575..1894299hypothetical protein
LOC_Os04g04140OsAffx.10637.3.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.4.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.1.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04150NANA4+1905562..1912230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.46314.2.S1_x_at5/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.45173.5.S1_x_at4/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.45173.1.S1_x_at3/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160OsAffx.20691.1.A1_x_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160Os.47114.1.S1_x_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04160OsAffx.20877.1.S1_at1/114+1917188..1926218retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13657.1.S1_at--865--2911Chr04:1892639..1892767 (25 bp)
AAGGAGCAAAGCAAAAGAGCCCCAA
LOC_Os04g04130
OsAffx.13657.1.S1_at--54--5871Chr04:1892760..1892783 (24 bp)
GAGCCCCAAACTATCAATCATTCTA
LOC_Os04g04130
OsAffx.13657.1.S1_at--952--10131Chr04:1892770..1892794 (25 bp)
TATCAATCATTCTAGCATGCCAAAA
LOC_Os04g04130
OsAffx.13657.1.S1_at--1077--7611Chr04:1892818..1892842 (25 bp)
GGGAAACTGCATACTCGTGGTTTAT
LOC_Os04g04130
OsAffx.13657.1.S1_at--577--1331Chr04:1893921..1893945 (25 bp)
AGAGGATATTCTTTTGAGTCAGGAG
LOC_Os04g04130
OsAffx.13657.1.S1_at--759--3071Chr04:1894005..1894029 (25 bp)
AATCAAATGGTATCTGAGGGCCAAA
LOC_Os04g04130
OsAffx.13657.1.S1_at--472--6131Chr04:1894020..1894044 (25 bp)
GAGGGCCAAATCTAAGGATATTCTA
LOC_Os04g04130
OsAffx.13657.1.S1_at--1094--6872Chr04:1894065..1894089 (25 bp)
GTATTTTCACTTGGTTGCAAATGGA
LOC_Os04g04130
OsAffx.13657.1.S1_at--1074--91Chr04:1894108..1894132 (25 bp)
ATTTTTGAACTACAAGATGGTGACC
LOC_Os04g04130
OsAffx.13657.1.S1_at--240--2454Chr04:1894151..1894175 (25 bp)
AAAATTTGAAATCGCATATTACCAC
LOC_Os04g04130
OsAffx.13657.1.S1_at--387--10371Chr04:1894191..1894215 (25 bp)
TTTTGGTCCTCCAGATGATTCTCCT
LOC_Os04g04130
Target Sequence 
AAGGAGCAAAGCAAAAGAGCCCCAAACTATCAATCATTCTAGCATGCCAAAATGGAAGAAATCTGAGGAGGAAAGGGGAA
ACTGCATACTCGTGGTTTATGGTGGATCAAGAAATCAAAAGAAACATGGGAGACAAAGAGGATATTCTTTTGAGTCAGGA
GGAATTGGATATTAGATGGTTTTATAGGAATAGATTATCTTCAATTATGAGAGAGGAGGAAATCAAATGGTATCTGAGGG
CCAAATCTAAGGATATTCTAGAGGGTGATTCTAATACAAAGTATTTTCACTTGGTTGCAAATGGAAAACATAGGAAAACT
AGAATTTTTGAACTACAAGATGGTGACCAATTAATAAATGGTGATGAAAATTTGAAATCGCATATTACCACTTATTATAA
GGGTCTTTTTGGTCCTCCAGATGATTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis