Browse Element(s) Details


OsAffx.20691.1.A1_x_at

Description gb:NM_195118.1
DB_XREF= gi:37531595
TID=OsAffx.20691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011A24.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g199402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g041601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g100401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g176101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g114541/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g051201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19910OsAffx.15503.1.S1_x_at10/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.15503.1.S1_at9/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.30326.1.S1_x_at3/116+11390392..11391975hypothetical protein
LOC_Os06g19920OsAffx.7163.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_x_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19930Os.17297.1.S1_at1/116+11411055..11415473retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.15504.1.S1_at10/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20733.1.A1_x_at4/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940Os.45173.1.S1_x_at3/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20691.1.A1_x_at2/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19950NANA6+11422611..11423936Transposable element protein, putative, MuDR
LOC_Os06g19960OsAffx.15506.1.S1_at11/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19960Os.20476.2.S1_a_at1/116+11438153..11446644Aconitase family containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20691.1.A1_x_at--372--9515Chr10:4915598..4915622 (25 bp)
TCTCGTCGCCGGAGTCGTCCTAGCG
NONE
OsAffx.20691.1.A1_x_at--678--9331Chr10:4915603..4915627 (25 bp)
TCGCCGGAGTCGTCCTAGCGCCATG
NONE
OsAffx.20691.1.A1_x_at--291--4211Chr10:4915753..4915777 (25 bp)
CCGCCGTCGGAGACCACTGGAGCAT
NONE
OsAffx.20691.1.A1_x_at--763--7191Chr10:4915758..4915782 (25 bp)
GTCGGAGACCACTGGAGCATCGTCG
NONE
OsAffx.20691.1.A1_x_at--838--5971Chr10:4915762..4915786 (25 bp)
GAGACCACTGGAGCATCGTCGCCGT
NONE
OsAffx.20691.1.A1_x_at--574--39134Chr12:15945208..15945230 (23 bp)
CGTCGCCGTCGTCAACCCGAAGAGC
NONE
OsAffx.20691.1.A1_x_at--75--3815Chr10:4915843..4915867 (25 bp)
CTCCGCCGCCGTTGTGGTCATCGGT
NONE
OsAffx.20691.1.A1_x_at--267--7117Chr12:10566406..10566425 (20 bp)
GTCATCGGTGAGTTCGTCGTGCCGT
NONE
OsAffx.20691.1.A1_x_at--37--512Chr10:4915862..4915886 (25 bp)
ATCGGTGAGTTCGTCGTGCCGTCCG
NONE
OsAffx.20691.1.A1_x_at--810--4853Chr10:4915886..4915910 (25 bp)
GCTACCCATTGGTGCCCTCCGTGTG
NONE
OsAffx.20691.1.A1_x_at--747--37Chr10:4915893..4915917 (25 bp)
ATTGGTGCCCTCCGTGTGCGTCCTC
NONE
Target Sequence 
TCTCGTCGCCGGAGTCGTCCTAGCGCCATGCGCCCTAGCTTCGCTGCCGCCGCCGCCGCTCCAGCCGTGCGCCGCCGTCG
TTCCAGCCGTCGCCGTCGCTCGGGAAGGCCGCCGTCGTGTTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCGCCGCC
GTCGGAGACCACTGGAGCATCGTCGCCGTCGTCAACCCGAAGAGCCCCGCCGTTTCCTCCTCGTCGCCGGCGCCGTCCGT
TGCTTCTCCGCCGCCGTTGTGGTCATCGGTGAGTTCGTCGTGCCGTCCGCTACCCATTGGTGCCCTCCGTGTGCGTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20691.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis