Browse Element(s) Details


OsAffx.20733.1.A1_x_at

Description gb:NM_194901.1
DB_XREF= gi:37531161
TID=OsAffx.20733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034B05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g046005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g199404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g229603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g097202/11Zinc knuckle family protein
LOC_Os05g199002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g238502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g318802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g063102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g169901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g447101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g271301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g063601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g069901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g199901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g361101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g010501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g233201/11transposon protein, putative, unclassified
LOC_Os09g195801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g179001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g120001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g300101/11transposon protein, putative, unclassified
LOC_Os08g120201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g187501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04550OsAffx.31869.5.S1_x_at2/114+2165239..2167107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04560NANA4+2167379..2168170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04574NANA4+2171155..2174666retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04590NANA4+2177935..2181944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04600OsAffx.20733.1.A1_x_at5/114+2186245..2189129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04600Os.47114.1.S1_x_at1/114+2186245..2189129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04610NANA4+2191444..2193325expressed protein
LOC_Os04g04620OsAffx.10020.1.S1_x_at2/114+2203292..2203708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04640OsAffx.3720.1.S1_at8/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04640OsAffx.4841.1.S1_at1/114+2208008..2221395Histidine decarboxylase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20733.1.A1_x_at--967--34316Chr12:15948098..15948122 (25 bp)
CAGTCATCGTCGTCGCTCGGGAAGA
NONE
OsAffx.20733.1.A1_x_at--992--72396Chr11:26545022..26545042 (21 bp)
GTCGCCGTCGTCAAGCCGAAGAGCG
NONE
OsAffx.20733.1.A1_x_at--647--26530Chr10:3268288..3268312 (25 bp)
AAGCCGAAGAGCGCCGCCGTTTCAA
NONE
OsAffx.20733.1.A1_x_at--556--27726Chr10:3268294..3268318 (25 bp)
AAGAGCGCCGCCGTTTCAACCTCGT
NONE
OsAffx.20733.1.A1_x_at--306--4255Chr10:3268345..3268369 (25 bp)
CCGTCGCTTTGGTCGCCGGTGAGAT
NONE
OsAffx.20733.1.A1_x_at--422--3692Chr10:3268351..3268375 (25 bp)
CTTTGGTCGCCGGTGAGATCGCCGT
NONE
OsAffx.20733.1.A1_x_at--907--7752Chr10:3268362..3268386 (25 bp)
GGTGAGATCGCCGTGCTGTCCGCTA
NONE
OsAffx.20733.1.A1_x_at--233--42534Chr10:3268372..3268396 (25 bp)
CCGTGCTGTCCGCTACCCGTTGGTG
NONE
OsAffx.20733.1.A1_x_at--346--7796Chr10:3268393..3268417 (25 bp)
GGTGCCCTCCGTTCGTGCTGAAGCA
NONE
OsAffx.20733.1.A1_x_at--831--7293Chr10:3268394..3268418 (25 bp)
GTGCCCTCCGTTCGTGCTGAAGCAC
NONE
OsAffx.20733.1.A1_x_at--740--6693Chr10:3268403..3268427 (25 bp)
GTTCGTGCTGAAGCACCGCCGTTCG
NONE
Target Sequence 
CAGTCATCGTCGTCGCTCGGGAAGACCGCCGTCGGGGTCGCCAAGTCGTCGCCGTCCTCGTCCGCCGCTTCGCCACCGCC
AAAGACCGCCAGAGCACCGTCGCCGTCGTCAAGCCGAAGAGCGCCGCCGTTTCAACCTCGTCGTCGTCGCCGTCCGTTGG
TCTTCCGCCGTCGCTTTGGTCGCCGGTGAGATCGCCGTGCTGTCCGCTACCCGTTGGTGCCCTCCGTTCGTGCTGAAGCA
CCGCCGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20733.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis