Browse Element(s) Details


OsAffx.4841.1.S1_at

Description tigr:9634.m01492
TID=OsAffx.4841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1489010/11hypothetical protein
LOC_Os12g201903/11retrotransposon protein, putative, unclassified
LOC_Os04g046401/11Histidine decarboxylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14830OsAffx.13878.1.S1_at2/116+8430065..8431051hypothetical protein
LOC_Os06g14840OsAffx.29313.1.S1_at1/116+8433868..8435394transposon protein, putative, Mutator sub-class
LOC_Os06g14850NANA6+8443359..8445473SWIM zinc finger family protein
LOC_Os06g14860NANA6+8446689..8448279hypothetical protein
LOC_Os06g14870Os.53606.1.S1_at11/116+8452430..8453088expressed protein
LOC_Os06g14879NANA6+8454482..8454726NA
LOC_Os06g14890OsAffx.4841.1.S1_at10/116+8455826..8456919hypothetical protein
LOC_Os06g14890OsAffx.23309.2.S1_x_at1/116+8455826..8456919hypothetical protein
LOC_Os06g14890OsAffx.20017.1.S1_at1/116+8455826..8456919hypothetical protein
LOC_Os06g14900NANA6+8462150..8463030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14910NANA6+8463877..8465737retrotransposon protein, putative, unclassified
LOC_Os06g14920NANA6+8467007..8470274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14930NANA6+8471698..8472129transposon protein, putative, unclassified
LOC_Os06g14940NANA6+8481199..8482624hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4841.1.S1_at--909--5311Chr06:8456840..8456864 (25 bp)
GAAGGGCCAGACTATGGAGCCACAT
LOC_Os06g14890
OsAffx.4841.1.S1_at--241--8431Chr06:8456836..8456860 (25 bp)
GGCCAGACTATGGAGCCACATGGCT
LOC_Os06g14890
OsAffx.4841.1.S1_at--656--1391Chr06:8456832..8456856 (25 bp)
AGACTATGGAGCCACATGGCTGGAT
LOC_Os06g14890
OsAffx.4841.1.S1_at--851--3312Chr07:9008978..9009347 (25 bp)
CACATGGCTGGATGGGAAGGATCAA
NONE
OsAffx.4841.1.S1_at--19--8351NONE
GGCTGGATGGGAAGGATCAAACCAT
NONE
OsAffx.4841.1.S1_at--924--5093Chr12:11766147..11766168 (22 bp)
GCACGCTCAGAACCCAAAGGCAGAT
LOC_Os12g20190
OsAffx.4841.1.S1_at--83--4831Chr06:8455908..8455932 (25 bp)
GCTCAGAACCCAAAGGCAGATTCTT
LOC_Os06g14890
OsAffx.4841.1.S1_at--497--2312Chr06:8455897..8455921 (25 bp)
AAAGGCAGATTCTTTGGACCTGCAC
LOC_Os06g14890
OsAffx.4841.1.S1_at--1038--6414Chr08:17586786..17586809 (24 bp)
GATCTCTTAGGCCAGTGCGTGTTTT
NONE
OsAffx.4841.1.S1_at--133--9498Chr11:24055657..24055712 (25 bp)
TCTCTTAGGCCAGTGCGTGTTTTTC
NONE
OsAffx.4841.1.S1_at--683--9532Chr08:17586789..17586813 (25 bp)
TCTTAGGCCAGTGCGTGTTTTTCGC
NONE
Target Sequence 
GAAGGGCCAGACTATGGAGCCACATGGCTGGATGGGAAGGATCAAACCATCTGGCACGCTCAGAACCCAAAGGCAGATTC
TTTGGACCTGCACTAGAGTTAAGCAGATCTCTTAGGCCAGTGCGTGTTTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis