Browse Element(s) Details


OsAffx.20017.1.S1_at

Description tigr:9640.m03797
TID=OsAffx.20017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3898011/11hypothetical protein
LOC_Os05g127205/11hypothetical protein
LOC_Os05g447405/11transposon protein, putative, Mutator sub-class
LOC_Os06g148901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed
LOC_Os12g38980OsAffx.20017.1.S1_at11/1112+23937166..23938105hypothetical protein
LOC_Os12g38990OsAffx.32089.1.S1_at11/1112+23947305..23948240BED zinc finger family protein
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein
LOC_Os12g39010Os.14491.2.S1_x_at2/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.47463.1.S1_x_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.27037.1.A1_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20017.1.S1_at--1015--7691Chr12:23937650..23937674 (25 bp)
GGGTCATTTTTCAGCTTGCCAGATG
LOC_Os12g38980
OsAffx.20017.1.S1_at--553--7032Chr05:7284344..7284368 (25 bp)
GTAAAACATTGCCAACCCAACTTGT
LOC_Os05g12720
OsAffx.20017.1.S1_at--887--1813Chr05:7284358..7284382 (25 bp)
ACCCAACTTGTTGACATGCATAACT
LOC_Os05g12720
OsAffx.20017.1.S1_at--433--10552Chr12:23937539..23937563 (25 bp)
TTCATAGCTGAACACTTCATATGGG
LOC_Os12g38980
OsAffx.20017.1.S1_at--701--5192Chr12:23937507..23937531 (25 bp)
GCAATACATGACTTTGTGGTGTTCT
LOC_Os12g38980
OsAffx.20017.1.S1_at--968--7493Chr05:7284458..7284477 (20 bp)
GTGGTGTTCTATGGATGGTGACTCT
LOC_Os05g12720
OsAffx.20017.1.S1_at--224--7772Chr05:7284469..7284493 (25 bp)
GGTGACTCTGTTGAGATTACATCAG
LOC_Os05g12720
OsAffx.20017.1.S1_at--952--6551Chr12:23937462..23937486 (25 bp)
GATTACATCAGACGAACAATTGCTA
LOC_Os12g38980
OsAffx.20017.1.S1_at--515--75Chr12:23937444..23937468 (25 bp)
ATTGCTAGATTGGTTTCAGTTGAAC
LOC_Os12g38980
OsAffx.20017.1.S1_at--1009--7653Chr05:7284535..7284625 (25 bp)
GGGATGTATCATCCTTCAGTGAGGA
LOC_Os05g12720
OsAffx.20017.1.S1_at--449--3831Chr12:23937303..23937327 (25 bp)
CTGCTGCTGCCCCTAATAGTAATGG
LOC_Os12g38980
Target Sequence 
GGGTCATTTTTCAGCTTGCCAGATGAAGGGCCAAAGACCTATATGGAGGGTAAAACATTGCCAACCCAACTTGTTGACAT
GCATAACTATGACTTGCTAGAATTAGTAAATTTCATAGCTGAACACTTCATATGGGGTTCTAAGCAATACATGACTTTGT
GGTGTTCTATGGATGGTGACTCTGTTGAGATTACATCAGACGAACAATTGCTAGATTGGTTTCAGTTGAACCTAGAGAAG
GGGGATGTATCATCCTTCAGTGAGGAGGTGCAGGTGTGGGTGCTGCTGCTGCCCCTAATAGTAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis